Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 1.7e-91 339.3 177 100.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.1e-61 240.4 178 71.3
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 5.4e-61 238.0 172 72.7
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.2e-61 237.3 178 69.1
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.5e-58 229.9 178 66.9
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.9e-58 229.6 178 66.9
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 7.3e-58 227.6 178 68.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.4e-56 223.4 171 67.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.4e-56 223.4 172 66.3
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.8e-56 223.0 172 66.9
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.8e-56 223.0 172 66.9
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 6.8e-56 221.1 166 68.1
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 6.8e-56 221.1 172 65.7
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.2e-55 220.3 178 65.7
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.5e-55 219.9 166 67.5
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 1.3e-54 216.9 178 63.5
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 2.2e-54 216.1 167 66.5
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.7e-54 215.3 178 61.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 3.7e-54 215.3 173 61.3
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.7e-54 215.3 178 63.5
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 6.4e-54 214.5 171 63.2
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 8.3e-54 214.2 183 62.8
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 8.3e-54 214.2 166 66.9
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 8.3e-54 214.2 178 63.5
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.4e-53 213.4 167 66.5
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.4e-53 213.4 167 66.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.4e-53 213.4 178 64.0
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.4e-53 213.4 178 64.0
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 7.1e-53 211.1 177 62.1
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.2e-52 210.3 177 62.1
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 4.6e-52 208.4 167 67.1
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.0e-52 208.0 179 63.7
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.0e-52 208.0 179 63.1
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.3e-51 206.1 179 63.7
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 3.0e-51 205.7 169 65.1
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 5.1e-51 204.9 173 63.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.6e-50 201.4 202 55.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 1.8e-48 196.4 177 57.6
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 4.0e-48 195.3 176 61.9
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 4.0e-48 195.3 163 65.6
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 4.0e-48 195.3 179 59.8
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.2e-48 194.9 173 59.0
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 5.2e-48 194.9 171 59.6
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.5e-47 193.4 179 58.1
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.0e-47 193.0 173 59.0
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 2.6e-47 192.6 153 66.7
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 2.6e-47 192.6 153 66.7
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 2.6e-47 192.6 167 59.3
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 3.4e-47 192.2 173 59.0
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 7.6e-47 191.0 174 59.2
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 7.6e-47 191.0 154 64.3
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 9.9e-47 190.7 153 65.4
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 2.2e-46 189.5 182 57.7
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 3.8e-46 188.7 173 57.8
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 4.9e-46 188.3 173 56.6
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 8.4e-46 187.6 172 57.6
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.9e-45 186.4 168 60.7
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.9e-45 186.4 170 57.6
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 2.4e-45 186.0 173 57.2
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.2e-45 185.7 173 57.2
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 7.1e-45 184.5 156 62.8
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 9.3e-45 184.1 155 64.5
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.1e-44 183.0 167 56.9
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 2.7e-44 182.6 173 56.6
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 4.6e-44 181.8 166 57.8
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 4.6e-44 181.8 157 61.8
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 6.0e-44 181.4 178 54.5
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.0e-44 181.4 169 58.0
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 3.0e-43 179.1 169 55.0
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 3.9e-43 178.7 175 53.7
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 6.6e-43 177.9 151 60.9
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.1e-42 177.2 177 53.7
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.1e-42 177.2 177 53.7
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 2.5e-42 176.0 174 55.2
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 3.3e-42 175.6 176 54.0
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 7.3e-42 174.5 174 55.7
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.6e-41 173.3 153 60.1
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 4.8e-41 171.8 198 50.0
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 6.2e-41 171.4 171 53.8
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.1e-40 170.6 130 67.7
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 2.4e-40 169.5 166 53.0
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 2.4e-40 169.5 154 59.7
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.1e-40 169.1 135 65.2
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 3.1e-40 169.1 178 51.7
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 3.1e-40 169.1 178 52.2
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 4.4e-39 165.2 165 54.5
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 5.8e-39 164.9 153 56.9
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 7.6e-39 164.5 164 57.9
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 7.6e-39 164.5 171 53.8
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 9.9e-39 164.1 165 52.1
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 2.2e-38 162.9 178 50.6
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 6.4e-38 161.4 167 53.3
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-37 160.6 169 53.3
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.9e-37 159.8 211 48.3
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 3.2e-37 159.1 133 63.2
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 4.2e-37 158.7 159 54.7
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 4.2e-37 158.7 217 45.6
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 5.4e-37 158.3 172 52.3
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 2.1e-36 156.4 150 58.7
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.7e-36 156.0 165 51.5
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.5e-36 155.6 161 52.2
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.0e-35 154.1 173 51.4
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.0e-35 154.1 159 55.3
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.0e-35 154.1 135 60.0
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.0e-35 154.1 219 46.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.7e-35 153.3 175 48.0
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.3e-35 152.9 165 50.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 3.0e-35 152.5 167 53.3
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 6.6e-35 151.4 130 62.3
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.1e-34 150.6 176 50.6
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 3.3e-34 149.1 130 57.7
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.3e-34 149.1 149 57.7
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 3.3e-34 149.1 146 55.5
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 4.3e-34 148.7 168 51.8
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.6e-33 146.7 166 48.8
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 1.6e-33 146.7 167 46.1
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 2.8e-33 146.0 171 48.5
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 2.8e-33 146.0 171 48.5
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 8.1e-33 144.4 158 55.1
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-32 144.1 135 57.8
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.4e-32 143.7 135 57.8
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.8e-32 143.3 267 37.5
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.2e-31 140.6 178 48.3
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 2.0e-31 139.8 158 53.8
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.6e-31 139.4 115 66.1
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 1.7e-30 136.7 186 45.2
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.4e-30 134.8 154 50.6
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 8.4e-30 134.4 177 46.3
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.5e-28 129.0 149 49.7
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 7.9e-28 127.9 109 65.1
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.3e-27 127.1 86 68.6
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 9.6e-26 120.9 91 64.8
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.8e-25 119.4 83 63.9
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 3.1e-24 115.9 133 48.9
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 6.9e-24 114.8 173 43.9
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.2e-20 104.0 82 72.0
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 5.1e-19 98.6 81 66.7
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 7.4e-18 94.7 82 63.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.6e-18 94.4 85 60.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 3.7e-17 92.4 90 57.8
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 3.1e-16 89.4 109 53.2
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 9.0e-16 87.8 79 59.5
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.0e-15 86.7 171 34.5
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 5.8e-15 85.1 111 47.7
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 7.6e-15 84.7 79 57.0
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 1.1e-13 80.9 138 41.3
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.4e-13 80.5 164 32.9
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.7e-09 65.9 51 72.5
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 5.9e-07 58.5 55 56.4
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 1.3e-06 57.4 49 67.3
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.3e-06 57.4 49 67.3


User provided reference genes

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