Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 2090.5 1043 100.0
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1587.8 1030 76.2
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1580.5 1030 75.0
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1525.0 1029 73.2
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1499.2 1040 71.4
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1494.6 1031 71.0
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1488.4 1037 70.8
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1487.2 1039 71.6
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1487.2 1027 71.1
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1485.7 1040 70.7
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1479.5 1056 69.0
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1477.2 1023 71.3
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1469.1 1035 70.4
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1454.5 1047 68.6
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1452.6 1036 68.8
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1452.6 1031 69.8
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1449.5 1037 68.7
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1446.8 1041 68.5
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1437.9 1053 68.7
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1435.2 1036 68.5
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1431.8 1041 68.1
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1421.8 1054 68.2
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1416.7 1028 68.2
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1415.2 1040 67.5
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1415.2 1030 67.4
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1414.1 1035 69.0
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1410.2 1029 67.7
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1407.9 1043 68.4
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1407.5 1028 67.6
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1402.9 1029 67.1
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1402.9 1028 67.4
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1402.9 1035 67.3
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1402.5 1028 67.4
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1398.6 1051 67.2
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1397.5 1051 67.1
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1395.9 1051 65.3
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1389.4 1042 66.9
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1389.4 1051 66.8
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1385.9 1049 66.8
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1382.9 1036 66.7
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1379.8 1047 67.0
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1379.0 1037 65.1
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1379.0 1054 64.5
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1379.0 1040 66.0
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1376.3 1051 66.5
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1373.6 1046 64.0
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1370.1 1030 66.3
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1370.1 1029 64.9
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1359.4 1031 66.1
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1358.2 1037 64.6
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1357.0 1036 64.8
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1355.5 1055 63.4
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1347.4 1038 63.2
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1347.4 1036 64.9
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1344.3 1049 64.0
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1336.6 1037 63.3
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1334.3 931 71.2
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1333.9 1032 65.9
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1333.2 1034 64.6
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1331.2 1049 62.7
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1324.7 1155 59.0
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1323.5 1034 63.5
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1317.0 1050 63.0
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1315.4 1034 63.5
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1313.9 889 73.2
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1305.4 1045 63.9
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1304.3 1077 61.4
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1303.9 1049 61.8
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1303.1 1034 62.3
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1302.7 1050 62.9
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1293.9 1049 61.8
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1290.0 1036 61.5
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1289.6 1036 61.3
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1288.9 1049 61.1
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1285.4 1049 61.6
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1284.6 1048 62.5
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1281.9 1054 61.7
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1280.0 920 70.0
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1277.7 1052 60.8
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1271.1 1049 60.8
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1266.1 1054 61.6
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1251.5 1045 61.1
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1245.0 1034 60.6
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1233.4 1034 60.2
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1213.0 1034 58.9
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1204.9 1040 60.5
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1174.1 1037 57.4
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1173.7 1040 59.3
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1166.0 1064 56.2
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1139.8 1034 58.9
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1119.0 903 62.7
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1085.1 896 61.3
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 0.0e+00 1076.6 882 61.6
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 7.1e-310 1067.4 1068 51.7
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 1.1e-270 937.2 692 69.9
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 9.7e-259 897.5 743 61.4
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 1.3e-255 887.1 726 64.0
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 1.4e-241 840.5 618 66.2
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.4e-236 823.9 1066 43.5
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 1.7e-234 817.0 694 59.7
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 5.5e-222 775.4 1055 41.7
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 2.1e-221 773.5 1059 41.6
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 2.7e-208 729.9 512 70.7
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.6e-200 704.1 681 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 2.1e-181 640.6 766 46.6
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 4.7e-181 639.4 582 54.6
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 3.0e-159 567.0 441 62.4
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 3.5e-144 516.9 1053 32.9
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 6.1e-144 516.2 653 45.8
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 3.0e-135 487.3 438 59.4
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 4.3e-134 483.4 451 56.3
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 4.5e-123 446.8 423 55.8
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 7.2e-121 439.5 313 66.1
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 3.4e-94 350.9 629 34.0
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 1.2e-78 299.3 304 53.0
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 1.6e-64 252.3 407 41.5
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 6.0e-59 233.8 226 54.4
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 1.5e-46 192.6 168 63.7
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 3.8e-45 188.0 113 77.0
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 1.0e-42 179.9 972 22.9
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 1.1e-41 176.4 151 56.3
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 6.9e-39 167.2 118 66.1
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 4.8e-32 144.4 130 56.2
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.3e-29 136.3 353 29.7
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 2.8e-16 92.0 542 23.6


User provided reference genes

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