Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026434001 Vitis vinifera HOM05D000534 ORTHO05D018172 6.0e-29 130.2 67 100.0
Cc07_g12280 Coffea canephora HOM05D000534 ORTHO05D000389 3.7e-10 67.8 44 68.2
Duzib106G1294 Durio zibethinus HOM05D000534 ORTHO05D000389 3.7e-10 67.8 44 70.5
Eucgr.I02197 Eucalyptus grandis HOM05D000534 ORTHO05D000389 4.8e-10 67.4 44 70.5
PGR119G0613 Punica granatum HOM05D000534 ORTHO05D000389 4.8e-10 67.4 44 70.5
Gohir.A05G289600 Gossypium hirsutum HOM05D000534 ORTHO05D000389 8.2e-10 66.6 44 70.5
Hma1.2p1_0034F.1_g021630 Hydrangea macrophylla HOM05D000534 ORTHO05D000389 1.1e-09 66.2 44 65.9
Potri.011G145600 Populus trichocarpa HOM05D000534 ORTHO05D000389 1.1e-09 66.2 44 70.5
COL.COLO4_05369 Corchorus olitorius HOM05D000534 ORTHO05D000389 1.4e-09 65.9 44 63.6
Rhsim10G0190900 Rhododendron simsii HOM05D000534 ORTHO05D000389 1.4e-09 65.9 44 70.5
Gohir.D05G291000 Gossypium hirsutum HOM05D000534 ORTHO05D000389 2.4e-09 65.1 44 68.2
Gorai.009G306200 Gossypium raimondii HOM05D000534 ORTHO05D000389 2.4e-09 65.1 44 68.2
Duzib106G0713 Durio zibethinus HOM05D000534 ORTHO05D000389 4.0e-09 64.3 44 65.9
Sabra11G0130600 Salix brachista HOM05D000534 ORTHO05D000389 4.0e-09 64.3 44 68.2
GSVIVG01026431001 Vitis vinifera HOM05D000534 ORTHO05D000389 4.0e-09 64.3 44 77.3
vmacro20402 Vaccinium macrocarpon HOM05D000534 ORTHO05D000389 5.3e-09 63.9 44 68.2
Lj3g0001327 Lotus japonicus HOM05D000534 ORTHO05D000389 6.9e-09 63.5 45 66.7
PGSC0003DMG400017870 Solanum tuberosum HOM05D000534 ORTHO05D000389 6.9e-09 63.5 44 68.2
Nitab4.5_0005948g0010 Nicotiana tabacum HOM05D000534 ORTHO05D000389 9.0e-09 63.2 44 65.9
Lj5g0003648 Lotus japonicus HOM05D000534 ORTHO05D000389 1.2e-08 62.8 45 66.7
vmacro20403 Vaccinium macrocarpon HOM05D000534 ORTHO05D000389 1.2e-08 62.8 44 63.6
Actinidia22862 Actinidia chinensis HOM05D000534 ORTHO05D000389 1.5e-08 62.4 44 68.2
Lj4C245G2 Lonicera japonica HOM05D000534 ORTHO05D000389 1.5e-08 62.4 44 59.1
Peaxi162Scf00981g00317 Petunia axillaris HOM05D000534 ORTHO05D000389 2.0e-08 62.0 43 67.4
Sopen02g011960 Solanum pennellii HOM05D000534 ORTHO05D000389 2.0e-08 62.0 44 65.9
COL.COLO4_27233 Corchorus olitorius HOM05D000534 ORTHO05D000389 2.6e-08 61.6 44 65.9
Duzib106G0543 Durio zibethinus HOM05D000534 ORTHO05D000389 2.6e-08 61.6 44 65.9
Potri.011G145700 Populus trichocarpa HOM05D000534 ORTHO05D000389 2.6e-08 61.6 45 60.0
Thecc.10G096500 Theobroma cacao HOM05D000534 ORTHO05D000389 2.6e-08 61.6 44 65.9
Thecc.10G097000 Theobroma cacao HOM05D000534 ORTHO05D000389 2.6e-08 61.6 44 59.1
arahy.Tifrunner.gnm1.ann1.LM5V2S Arachis hypogaea HOM05D000534 ORTHO05D000389 3.4e-08 61.2 45 62.2
arahy.Tifrunner.gnm1.ann1.M37AJ6 Arachis hypogaea HOM05D000534 ORTHO05D000389 3.4e-08 61.2 45 62.2
Dinv40225 Davidia involucrata HOM05D000534 ORTHO05D000389 3.4e-08 61.2 44 63.6
Nitab4.5_0000235g0110 Nicotiana tabacum HOM05D000534 ORTHO05D000389 3.4e-08 61.2 44 63.6
CAN.G178.10 Capsicum annuum HOM05D000534 ORTHO05D000389 4.5e-08 60.8 44 65.9
CiPaw.07G000400 Carya illinoinensis HOM05D000534 ORTHO05D000389 4.5e-08 60.8 44 65.9
Gohir.D05G290900 Gossypium hirsutum HOM05D000534 ORTHO05D000389 4.5e-08 60.8 44 61.4
Gorai.009G306100 Gossypium raimondii HOM05D000534 ORTHO05D000389 4.5e-08 60.8 44 61.4
Thecc.10G097300 Theobroma cacao HOM05D000534 ORTHO05D000389 4.5e-08 60.8 44 59.1
EL10Ac6g15159 Beta vulgaris HOM05D000534 ORTHO05D000389 7.6e-08 60.1 44 61.4
Gohir.D13G013200 Gossypium hirsutum HOM05D000534 ORTHO05D000389 7.6e-08 60.1 44 63.6
Thecc.10G096400 Theobroma cacao HOM05D000534 ORTHO05D000389 7.6e-08 60.1 44 65.9
CSS0040249 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 1.0e-07 59.7 44 61.4
CSS0048210 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 1.0e-07 59.7 44 61.4
Duzib128G0915 Durio zibethinus HOM05D000534 ORTHO05D000389 1.0e-07 59.7 44 63.6
Solyc02g037550.3 Solanum lycopersicum HOM05D000534 ORTHO05D000389 1.0e-07 59.7 44 63.6
AUR62029516 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.3e-07 59.3 68 44.1
Gohir.A05G289700 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.3e-07 59.3 44 65.9
Gohir.D05G291100 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.3e-07 59.3 44 65.9
Gorai.009G306300 Gossypium raimondii HOM05D000534 ORTHO05D000389 1.3e-07 59.3 44 65.9
Potri.001G456400 Populus trichocarpa HOM05D000534 ORTHO05D000389 1.3e-07 59.3 44 65.9
CAN.G1330.19 Capsicum annuum HOM05D000534 ORTHO05D000389 1.7e-07 58.9 44 68.2
Gohir.A05G289500 Gossypium hirsutum HOM05D000534 ORTHO05D000389 1.7e-07 58.9 44 59.1
Sabra16G0308700 Salix brachista HOM05D000534 ORTHO05D000389 1.7e-07 58.9 44 65.9
QL06p053388 Quercus lobata HOM05D000534 ORTHO05D000389 2.9e-07 58.2 44 61.4
Glyma.10G189000 Glycine max HOM05D000534 ORTHO05D000389 3.8e-07 57.8 45 60.0
Solyc04g082830.3 Solanum lycopersicum HOM05D000534 ORTHO05D000389 3.8e-07 57.8 44 63.6
Sopen04g036470 Solanum pennellii HOM05D000534 ORTHO05D000389 3.8e-07 57.8 44 63.6
PGSC0003DMG400009927 Solanum tuberosum HOM05D000534 ORTHO05D000389 3.8e-07 57.8 44 63.6
Duzib128G1142 Durio zibethinus HOM05D000534 ORTHO05D000389 4.9e-07 57.4 44 61.4
Thecc.10G096700 Theobroma cacao HOM05D000534 ORTHO05D000389 4.9e-07 57.4 44 54.5
Cfa007117 Carpinus fangiana HOM05D000534 ORTHO05D000389 6.5e-07 57.0 44 61.4
AUR62029517 Chenopodium quinoa HOM05D000534 ORTHO05D000389 6.5e-07 57.0 44 65.9
Potri.003G108100 Populus trichocarpa HOM05D000534 ORTHO05D000389 6.5e-07 57.0 44 56.8
QL04p025418 Quercus lobata HOM05D000534 ORTHO05D000389 6.5e-07 57.0 44 61.4
HPP92_022735 Vanilla planifolia HOM05D000534 ORTHO05D000389 6.5e-07 57.0 61 47.5
AUR62018022 Chenopodium quinoa HOM05D000534 ORTHO05D000389 8.4e-07 56.6 44 59.1
Glyma.03G113600 Glycine max HOM05D000534 ORTHO05D000389 8.4e-07 56.6 45 53.3
COL.COLO4_34183 Corchorus olitorius HOM05D000534 ORTHO05D000389 1.1e-06 56.2 44 61.4
Lalb_Chr10g0095521 Lupinus albus HOM05D000534 ORTHO05D018172 1.1e-06 56.2 45 55.6
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 1.4e-06 55.8 45 57.8
COL.COLO4_33716 Corchorus olitorius HOM05D000534 ORTHO05D000389 1.4e-06 55.8 44 61.4
Peaxi162Scf00385g00415 Petunia axillaris HOM05D000534 ORTHO05D000389 1.4e-06 55.8 44 63.6
CiPaw.14G014800 Carya illinoinensis HOM05D000534 ORTHO05D000389 1.9e-06 55.5 44 61.4
CiPaw.14G015000 Carya illinoinensis HOM05D000534 ORTHO05D000389 1.9e-06 55.5 44 61.4
AUR62029518 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.9e-06 55.5 41 63.4
COL.COLO4_03585 Corchorus olitorius HOM05D000534 ORTHO05D000389 1.9e-06 55.5 44 56.8
FvH4_5g26330 Fragaria vesca HOM05D000534 ORTHO05D000389 1.9e-06 55.5 45 51.1
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.9e-06 55.5 45 51.1
FAN18G3737 Fragaria x ananassa HOM05D000534 ORTHO05D000389 1.9e-06 55.5 45 51.1
Hma1.2p1_0034F.1_g021640 Hydrangea macrophylla HOM05D000534 ORTHO05D000389 1.9e-06 55.5 44 56.8
Nitab4.5_0000464g0020 Nicotiana tabacum HOM05D000534 ORTHO05D000389 1.9e-06 55.5 44 61.4
arahy.Tifrunner.gnm1.ann1.38DL7I Arachis hypogaea HOM05D000534 ORTHO05D000389 2.5e-06 55.1 64 43.8
arahy.Tifrunner.gnm1.ann1.SG2P31 Arachis hypogaea HOM05D000534 ORTHO05D000389 2.5e-06 55.1 64 43.8
Oeu064729.3 Olea europaea HOM05D000534 ORTHO05D000389 2.5e-06 55.1 44 59.1
VMungo0331G1535 Vigna mungo HOM05D000534 ORTHO05D000389 3.2e-06 54.7 45 55.6
Cfa011005 Carpinus fangiana HOM05D000534 ORTHO05D000389 4.2e-06 54.3 44 59.1
AUR62003711 Chenopodium quinoa HOM05D000534 ORTHO05D000389 4.2e-06 54.3 44 56.8
Nn5g31063 Nelumbo nucifera HOM05D000534 ORTHO05D000389 4.2e-06 54.3 44 59.1
RcHm_v2.0_Chr7g0217081 Rosa chinensis HOM05D000534 ORTHO05D000389 4.2e-06 54.3 45 51.1
Haze_03645 Corylus avellana HOM05D000534 ORTHO05D000389 5.5e-06 53.9 44 59.1
Haze_22872 Corylus avellana HOM05D000534 ORTHO05D000389 5.5e-06 53.9 45 55.6
Phvul.011G144150 Phaseolus vulgaris HOM05D000534 ORTHO05D000389 5.5e-06 53.9 45 60.0
Phvul.L001693 Phaseolus vulgaris HOM05D000534 ORTHO05D000389 5.5e-06 53.9 45 60.0
Cfa014147 Carpinus fangiana HOM05D000534 ORTHO05D000389 7.1e-06 53.5 45 55.6
Glyma.20G201600 Glycine max HOM05D000534 ORTHO05D000389 7.1e-06 53.5 44 54.5
TAR376G0715 Trochodendron aralioides HOM05D000534 ORTHO05D000389 7.1e-06 53.5 44 59.1
VMungo0720G1894 Vigna mungo HOM05D000534 ORTHO05D000389 7.1e-06 53.5 44 54.5
CiPaw.14G014900 Carya illinoinensis HOM05D000534 ORTHO05D000389 9.3e-06 53.1 44 59.1
Ciclev10010809m.g Citrus clementina HOM05D000534 ORTHO05D000389 9.3e-06 53.1 44 56.8
QL03p074143 Quercus lobata HOM05D000677 ORTHO05D000727 9.3e-06 53.1 54 55.6
QL04p025430 Quercus lobata HOM05D000534 ORTHO05D000389 9.3e-06 53.1 44 59.1


User provided reference genes

Program Settings