Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.2e-101 373.2 192 100.0
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.4e-54 216.1 185 67.0
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 9.7e-48 194.1 193 61.1
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.8e-46 189.9 196 58.2
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.0e-45 186.4 194 55.2
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 3.4e-45 185.7 185 58.9
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 6.5e-44 181.4 181 61.3
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 6.5e-44 181.4 191 57.6
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.2e-43 179.1 185 58.4
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 4.2e-43 178.7 206 56.3
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.2e-42 177.2 182 57.7
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.1e-42 176.4 195 55.9
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.1e-42 176.4 195 55.9
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 6.1e-42 174.9 192 56.2
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 8.0e-42 174.5 194 54.1
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 1.0e-41 174.1 186 55.9
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.4e-40 168.7 199 53.8
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 5.7e-40 168.3 187 50.8
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 2.8e-39 166.0 184 53.8
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.3e-39 164.9 178 57.3
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 6.3e-39 164.9 180 56.7
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 8.2e-39 164.5 186 53.8
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.8e-38 163.3 198 53.0
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 3.1e-38 162.5 192 52.6
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 9.1e-38 161.0 188 47.9
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.2e-37 160.6 196 52.0
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 3.5e-37 159.1 175 50.3
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 3.5e-37 159.1 191 48.2
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 5.9e-37 158.3 197 48.7
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 1.7e-36 156.8 176 56.2
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 2.2e-36 156.4 191 49.7
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 6.5e-36 154.8 188 48.4
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 6.5e-36 154.8 187 48.1
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 8.5e-36 154.5 190 54.2
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 2.5e-35 152.9 183 50.8
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.5e-35 152.9 162 55.6
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 4.2e-35 152.1 185 48.1
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 4.2e-35 152.1 171 55.0
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 4.2e-35 152.1 188 48.4
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 5.5e-35 151.8 188 50.0
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 7.2e-35 151.4 185 48.1
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.6e-34 150.2 193 47.7
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.7e-34 149.4 187 46.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.1e-34 148.3 185 47.6
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.0e-33 147.5 187 47.6
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 4.0e-33 145.6 192 47.9
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 8.8e-33 144.4 188 45.7
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.0e-32 143.3 188 45.7
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 4.4e-32 142.1 193 46.1
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 4.4e-32 142.1 188 45.2
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.7e-32 141.7 189 46.0
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.7e-32 141.7 198 49.0
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 3.7e-31 139.0 190 44.2
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 6.3e-31 138.3 180 50.6
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 6.3e-31 138.3 187 44.4
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 6.3e-31 138.3 183 50.8
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 8.2e-31 137.9 193 47.7
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.1e-30 137.5 190 44.2
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 2.4e-30 136.3 175 49.1
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 3.1e-30 136.0 194 42.8
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 7.0e-30 134.8 192 47.9
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 7.0e-30 134.8 177 46.3
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 9.1e-30 134.4 190 44.7
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 2.0e-29 133.3 188 43.1
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.7e-29 132.9 190 46.8
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 2.7e-29 132.9 190 45.8
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 5.9e-29 131.7 188 44.1
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 5.9e-29 131.7 172 52.3
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 1.3e-28 130.6 185 44.9
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.3e-28 130.6 186 43.5
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.9e-28 129.4 182 44.5
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.8e-28 129.0 180 47.8
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 5.0e-28 128.6 189 42.9
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 5.0e-28 128.6 191 44.5
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 1.1e-27 127.5 198 43.9
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.2e-27 125.9 183 44.8
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 3.2e-27 125.9 173 43.9
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 7.2e-27 124.8 192 43.8
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 7.2e-27 124.8 188 44.7
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.1e-26 123.2 188 44.1
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.1e-26 123.2 210 44.3
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 3.6e-26 122.5 181 44.2
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 3.6e-26 122.5 188 44.1
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 4.7e-26 122.1 181 45.3
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.0e-25 120.9 189 42.3
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.4e-25 120.6 188 43.6
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 3.0e-25 119.4 201 42.8
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 5.2e-25 118.6 189 40.7
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.2e-24 117.5 181 45.3
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.5e-24 117.1 181 43.1
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.5e-24 117.1 192 42.7
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 2.0e-24 116.7 190 43.2
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 7.5e-24 114.8 185 43.2
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 9.8e-24 114.4 204 39.7
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.7e-23 112.5 205 40.0
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.8e-22 110.2 190 42.1
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.2e-21 107.5 192 38.0
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.2e-21 107.5 192 38.0
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 1.6e-21 107.1 186 38.2
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 3.5e-21 105.9 182 44.0
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.5e-21 105.5 180 37.8
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 7.7e-21 104.8 188 38.3
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 7.7e-21 104.8 163 46.6
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 7.7e-21 104.8 185 41.6
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.3e-20 104.0 188 37.8
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.3e-20 104.0 195 37.9
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.7e-20 103.6 197 38.1
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 3.8e-20 102.4 128 53.9
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 5.0e-20 102.1 192 38.0
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.1e-19 100.9 191 38.7
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.5e-19 99.8 182 41.8
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 3.3e-19 99.4 181 40.9
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 3.3e-19 99.4 181 40.9
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 9.5e-19 97.8 191 37.7
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 2.8e-18 96.3 182 41.2
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 2.8e-18 96.3 181 40.3
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 2.8e-18 96.3 189 37.0
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 6.1e-18 95.1 150 42.7
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 8.0e-18 94.7 180 40.6
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.4e-17 94.0 177 39.0
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.3e-17 93.2 222 32.0
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.0e-17 92.4 152 43.4
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 8.9e-17 91.3 182 34.6
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 8.9e-17 91.3 152 41.4
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 5.7e-16 88.6 171 39.8
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 3.1e-14 82.8 136 39.0
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.1e-14 82.4 114 39.5
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 9.2e-14 81.3 146 37.0
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 1.2e-13 80.9 130 41.5
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 1.2e-13 80.9 178 37.1
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 3.5e-13 79.3 135 38.5
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 4.5e-13 79.0 189 32.8
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 7.8e-13 78.2 147 42.2
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.0e-12 77.8 185 31.4
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 2.9e-12 76.3 209 32.5
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 1.1e-11 74.3 122 41.0
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.9e-11 73.6 188 30.3
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 1.9e-11 73.6 172 34.9
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.5e-11 73.2 171 32.7
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 3.3e-11 72.8 191 29.3
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 4.3e-11 72.4 199 29.6
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 4.3e-11 72.4 209 32.1
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.6e-11 72.0 116 37.9
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 9.5e-11 71.2 183 34.4
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 1.4e-09 67.4 58 50.0
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.5e-08 63.9 189 29.1
Sopen04g018350 Solanum pennellii HOM05D004244 ORTHO05D004964 2.0e-08 63.5 77 45.5
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 5.8e-08 62.0 184 28.3
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 1.7e-07 60.5 227 26.9
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 2.9e-07 59.7 175 30.3
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 4.9e-07 58.9 172 31.4
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 1.9e-06 57.0 171 30.4
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 2.4e-06 56.6 171 31.6


User provided reference genes

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