Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 1.0e-105 386.7 191 100.0
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 3.6e-95 351.7 191 86.9
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 4.7e-95 351.3 191 86.9
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 4.7e-95 351.3 191 91.1
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 6.2e-95 350.9 191 91.1
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 1.1e-94 350.1 191 90.1
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 4.0e-94 348.2 192 89.1
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 6.8e-94 347.4 191 90.6
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 8.9e-94 347.1 191 86.9
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 1.2e-93 346.7 190 88.4
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.5e-93 346.3 191 87.4
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 2.6e-93 345.5 191 89.5
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 3.4e-93 345.1 191 86.9
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 4.4e-93 344.7 194 87.1
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 4.4e-93 344.7 191 85.9
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 1.3e-92 343.2 191 86.9
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 1.3e-92 343.2 191 86.9
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 1.3e-92 343.2 191 86.9
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 1.7e-92 342.8 189 87.3
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.7e-92 342.8 192 88.0
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.7e-92 342.8 191 85.9
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 2.2e-92 342.4 190 86.8
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 2.2e-92 342.4 188 88.3
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 2.9e-92 342.0 189 87.3
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 3.7e-92 341.7 191 86.4
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 4.9e-92 341.3 191 87.4
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 6.4e-92 340.9 190 88.4
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 8.3e-92 340.5 191 86.9
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 8.3e-92 340.5 191 86.4
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 8.3e-92 340.5 192 86.5
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 1.1e-91 340.1 191 86.4
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.1e-91 340.1 191 86.9
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 1.4e-91 339.7 191 86.9
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.9e-91 339.3 191 86.4
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.4e-91 339.0 191 86.9
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 3.2e-91 338.6 191 84.3
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 3.2e-91 338.6 191 85.9
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 4.1e-91 338.2 191 85.9
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 5.4e-91 337.8 191 87.4
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 5.4e-91 337.8 192 86.5
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 5.4e-91 337.8 192 85.9
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 7.1e-91 337.4 191 86.9
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 7.1e-91 337.4 191 84.8
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 1.2e-90 336.7 191 83.8
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 2.1e-90 335.9 191 85.9
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.1e-90 335.9 191 86.9
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 2.1e-90 335.9 191 85.9
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 2.1e-90 335.9 191 85.9
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 2.7e-90 335.5 191 86.9
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 2.7e-90 335.5 191 84.8
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 3.5e-90 335.1 191 84.3
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 4.6e-90 334.7 194 84.5
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 6.0e-90 334.3 191 82.7
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 6.0e-90 334.3 191 83.8
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 6.0e-90 334.3 191 83.8
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 7.8e-90 334.0 191 85.9
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 7.8e-90 334.0 191 83.8
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 7.8e-90 334.0 188 84.0
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 1.0e-89 333.6 191 84.3
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 1.0e-89 333.6 191 84.3
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 1.0e-89 333.6 192 84.4
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 1.0e-89 333.6 191 84.8
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 1.3e-89 333.2 191 84.8
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 1.7e-89 332.8 193 83.4
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 1.7e-89 332.8 190 85.3
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 1.7e-89 332.8 191 84.3
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 2.3e-89 332.4 191 83.8
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 2.3e-89 332.4 191 85.9
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 3.0e-89 332.0 191 84.8
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 3.9e-89 331.6 191 83.8
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 3.9e-89 331.6 191 83.8
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 5.1e-89 331.3 191 84.8
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 5.1e-89 331.3 191 83.8
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 6.6e-89 330.9 191 83.2
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 6.6e-89 330.9 191 83.2
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 8.6e-89 330.5 191 83.2
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 8.6e-89 330.5 191 83.2
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 1.1e-88 330.1 191 82.7
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 1.9e-88 329.3 191 82.2
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 1.9e-88 329.3 191 82.7
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 83.2
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 83.2
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 3.3e-88 328.6 191 83.2
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 3.3e-88 328.6 192 81.8
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 7.3e-88 327.4 191 80.6
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 7.3e-88 327.4 191 82.7
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 7.3e-88 327.4 191 82.2
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 9.5e-88 327.0 191 82.7
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 9.5e-88 327.0 192 81.8
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 1.2e-87 326.6 191 81.7
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 2.1e-87 325.9 191 82.2
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 2.8e-87 325.5 191 78.0
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 2.8e-87 325.5 191 81.2
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 3.6e-87 325.1 191 82.2
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 4.7e-87 324.7 192 83.9
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.4e-86 323.2 191 81.2
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 1.8e-86 322.8 194 81.4
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.8e-86 322.8 191 81.2
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 6.8e-86 320.9 191 80.6
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 4.4e-85 318.2 186 82.3
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 1.7e-84 316.2 180 86.1
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 2.2e-84 315.8 191 82.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 8.4e-84 313.9 190 79.5
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 1.6e-82 309.7 191 77.5
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 4.6e-82 308.1 191 76.4
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 7.8e-82 307.4 191 77.0
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 1.6e-71 273.1 191 67.5
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.4e-70 270.0 183 75.4
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 5.3e-70 268.1 158 81.0
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 2.0e-69 266.2 157 79.6
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 3.8e-68 261.9 188 63.8
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.4e-67 260.0 191 66.5
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.4e-67 260.0 191 64.4
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 7.4e-64 247.7 148 84.5
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 7.4e-64 247.7 191 62.8
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.1e-63 246.1 149 81.9
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.3e-57 226.9 185 57.3
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 1.9e-56 223.0 149 73.2
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.6e-55 219.9 185 55.7
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 6.5e-52 208.0 192 49.5
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.9e-51 206.5 189 53.4
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 3.2e-51 205.7 189 53.4
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 1.6e-47 193.4 183 53.6
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.1e-47 193.0 184 58.2
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 3.6e-42 175.6 191 53.4
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 7.9e-42 174.5 191 52.4
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 1.8e-38 163.3 94 84.0
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 5.5e-35 151.8 91 80.2
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.9e-27 126.7 79 77.2
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 6.1e-26 121.7 185 36.2
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 1.8e-22 110.2 185 33.0
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 2.0e-21 106.7 51 94.1
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.5e-11 73.2 158 31.0
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 1.2e-08 64.3 31 90.3
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 1.3e-07 60.8 28 92.9


User provided reference genes

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