Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 6.1e-68 260.8 138 100.0
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 6.1e-60 234.2 133 89.5
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.0e-59 233.4 135 87.4
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.4e-59 233.0 138 86.2
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.8e-59 232.6 138 87.0
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 5.1e-59 231.1 138 85.5
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 8.8e-59 230.3 138 84.1
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 8.8e-59 230.3 138 87.0
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 8.8e-59 230.3 133 89.5
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.1e-58 229.9 137 85.4
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.5e-58 229.6 136 86.0
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.5e-58 229.6 138 83.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.5e-58 229.6 138 84.8
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.5e-58 229.6 136 86.0
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.5e-58 229.6 136 86.0
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.0e-58 229.2 133 88.0
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 2.0e-58 229.2 136 86.8
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.0e-58 229.2 138 84.1
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.7e-58 227.6 138 82.6
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 7.4e-58 227.3 138 82.6
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.3e-57 226.5 137 84.7
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.2e-57 225.7 133 86.5
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.2e-57 225.7 133 86.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.2e-57 225.7 132 85.6
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.2e-57 225.7 138 81.2
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.2e-57 225.7 137 84.7
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.8e-57 225.3 137 83.2
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.8e-57 225.3 138 81.9
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.8e-57 224.6 133 86.5
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.8e-57 224.6 137 83.2
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 4.8e-57 224.6 138 84.1
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 6.3e-57 224.2 137 82.5
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 6.3e-57 224.2 132 85.6
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 8.2e-57 223.8 136 83.8
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 8.2e-57 223.8 137 83.2
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 8.2e-57 223.8 132 84.8
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.8e-56 222.6 137 82.5
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.8e-56 222.6 138 82.6
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.4e-56 222.2 136 82.4
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 4.1e-56 221.5 138 81.2
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 4.1e-56 221.5 138 81.9
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.1e-56 221.5 138 84.1
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 5.3e-56 221.1 138 80.4
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 5.3e-56 221.1 138 80.4
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 7.0e-56 220.7 138 83.3
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.2e-55 219.9 137 81.8
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.2e-55 219.9 137 81.8
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.2e-55 219.9 137 81.8
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.2e-55 219.9 138 81.2
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-55 219.2 137 81.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-55 219.2 137 80.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.0e-55 219.2 137 80.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 2.0e-55 219.2 165 72.7
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 2.0e-55 219.2 137 82.5
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.6e-55 218.8 137 80.3
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.6e-55 218.8 137 80.3
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.6e-55 218.8 137 80.3
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.5e-55 218.4 137 81.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 4.5e-55 218.0 138 81.9
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 5.9e-55 217.6 138 81.2
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.9e-55 217.6 138 80.4
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 5.9e-55 217.6 138 79.7
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 5.9e-55 217.6 133 81.2
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 7.7e-55 217.2 137 79.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 7.7e-55 217.2 136 80.9
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 7.7e-55 217.2 132 84.1
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-54 216.5 137 79.6
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.3e-54 216.5 137 79.6
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.3e-54 216.5 132 84.1
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.7e-54 216.1 138 80.4
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.7e-54 216.1 138 79.0
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.9e-54 215.3 132 82.6
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.8e-54 214.9 137 79.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.5e-54 214.2 138 79.0
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.1e-53 213.4 176 67.6
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.5e-53 213.0 138 77.5
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.5e-53 212.2 137 76.6
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 4.2e-53 211.5 133 80.5
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 7.2e-53 210.7 132 81.1
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 9.4e-53 210.3 137 75.9
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.6e-52 209.5 138 79.7
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.1e-52 209.1 138 77.5
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-52 208.8 133 78.2
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 3.6e-52 208.4 138 76.8
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 3.6e-52 208.4 138 76.1
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 4.7e-52 208.0 147 73.5
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 4.7e-52 208.0 138 76.1
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 6.1e-52 207.6 138 78.3
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.1e-52 207.6 133 76.7
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 6.1e-52 207.6 138 76.8
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.8e-51 206.1 132 80.3
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-51 205.7 133 75.2
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.3e-51 205.7 202 60.4
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-51 205.3 133 75.2
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-51 205.3 133 75.2
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 3.0e-51 205.3 138 74.6
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.0e-51 205.3 143 74.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 3.9e-51 204.9 138 76.1
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-50 203.4 133 75.2
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.6e-50 202.2 175 65.1
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 7.4e-50 200.7 207 58.0
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.7e-49 199.5 111 91.0
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 2.2e-49 199.1 182 59.9
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.4e-48 196.4 114 87.7
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.4e-48 195.7 120 83.3
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 5.3e-48 194.5 111 88.3
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 7.0e-48 194.1 110 88.2
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 7.0e-48 194.1 111 88.3
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.2e-47 193.4 148 69.6
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.6e-47 193.0 111 85.6
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.6e-47 193.0 121 77.7
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.3e-46 189.9 111 84.7
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.9e-46 188.7 111 84.7
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.9e-46 188.7 136 75.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.0e-46 188.0 133 70.7
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 6.5e-46 187.6 111 83.8
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.5e-46 187.2 133 69.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.5e-45 186.4 131 75.6
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-44 183.3 133 69.2
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 4.7e-44 181.4 111 81.1
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 4.7e-44 181.4 111 81.1
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 8.0e-44 180.6 111 81.1
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-43 180.3 111 81.1
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.8e-43 179.5 219 50.2
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-42 176.8 111 79.3
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-42 176.4 111 79.3
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-42 176.4 111 79.3
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-42 175.6 111 78.4
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 5.7e-42 174.5 136 62.5
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.7e-41 172.9 106 80.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.7e-41 172.9 106 80.2
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 4.8e-41 171.4 135 60.0
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-40 169.1 110 75.5
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 3.1e-40 168.7 136 55.9
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 5.9e-39 164.5 132 62.1
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.9e-38 162.2 129 59.7
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 4.2e-37 158.3 147 61.2
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.1e-32 143.7 84 88.1
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.4e-32 143.3 84 85.7
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.9e-31 137.9 90 78.9
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-28 130.2 133 58.6
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.6e-28 129.8 197 41.6
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.1e-28 127.9 82 70.7
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 8.0e-28 127.5 84 82.1
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.0e-26 122.9 130 46.9
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.6e-26 122.5 70 88.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 4.9e-25 118.2 77 72.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 5.4e-24 114.8 133 41.4
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 7.8e-23 110.9 64 89.1
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-22 109.8 67 83.6
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-22 109.8 67 83.6
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 8.6e-22 107.5 67 82.1
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 5.2e-19 98.2 61 82.0
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-18 96.7 65 70.8
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.5e-18 96.7 65 70.8
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.2e-16 89.0 65 64.6
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 2.7e-15 85.9 133 33.1
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.0e-14 84.0 47 85.1
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.5e-13 80.1 130 30.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 5.6e-13 78.2 57 73.7
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.1e-12 76.3 53 66.0
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.6e-12 75.5 57 71.9
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.4e-11 73.6 50 78.0
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.2e-09 66.2 45 77.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.2e-09 66.2 45 77.8
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.4e-08 61.6 41 75.6


User provided reference genes

Program Settings