Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 6.0e-109 397.5 198 100.0
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 5.1e-84 314.7 198 74.2
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 8.7e-84 313.9 198 74.7
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.1e-83 313.5 196 75.0
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 2.5e-83 312.4 198 72.7
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 9.6e-83 310.5 198 74.7
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 4.8e-82 308.1 198 73.7
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 6.2e-82 307.8 197 71.1
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 8.1e-82 307.4 195 71.8
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.4e-81 306.6 197 72.6
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.8e-81 306.2 197 75.6
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.8e-81 306.2 196 73.0
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 2.4e-81 305.8 196 73.0
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.4e-81 305.8 197 73.6
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 71.7
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 3.1e-81 305.4 197 70.6
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 70.7
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.1e-81 305.4 196 74.5
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.0e-81 305.1 198 70.7
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 72.2
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 5.3e-81 304.7 197 71.1
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 6.9e-81 304.3 197 71.1
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.9e-81 304.3 198 73.7
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 6.9e-81 304.3 198 70.7
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 72.7
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.2e-80 303.5 198 68.7
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.0e-80 302.8 196 71.9
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.6e-80 302.4 198 71.2
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 2.6e-80 302.4 198 72.2
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 70.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 4.4e-80 301.6 196 73.0
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 7.6e-80 300.8 198 69.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 9.9e-80 300.4 197 69.0
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 73.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.2e-79 299.3 198 69.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.2e-79 299.3 197 71.6
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.9e-79 298.9 198 69.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 4.9e-79 298.1 197 74.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 6.4e-79 297.7 197 72.1
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 72.2
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 71.7
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 69.7
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 8.4e-79 297.4 198 70.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 1.1e-78 297.0 198 71.7
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.4e-78 296.6 198 69.2
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.4e-78 296.6 198 71.2
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.4e-78 296.6 197 70.1
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 70.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.9e-78 296.2 197 69.0
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 2.4e-78 295.8 198 70.7
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.2e-78 295.4 198 69.7
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 3.2e-78 295.4 198 69.7
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 3.2e-78 295.4 198 73.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 71.2
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 71.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 68.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 68.2
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 9.3e-78 293.9 197 69.0
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 9.3e-78 293.9 198 70.7
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 9.3e-78 293.9 196 69.9
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.2e-77 293.5 197 68.5
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 71.2
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.1e-77 292.7 198 70.7
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 2.1e-77 292.7 189 72.0
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 69.2
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 2.7e-77 292.4 197 67.5
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 3.5e-77 292.0 198 70.7
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 67.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 66.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 69.7
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 66.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.0e-76 290.4 196 66.3
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.7e-76 289.7 198 67.7
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.7e-76 289.7 198 68.2
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 1.7e-76 289.7 198 69.2
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.3e-76 289.3 198 67.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.0e-76 288.9 196 68.9
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 3.0e-76 288.9 197 67.5
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 68.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 66.2
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.9e-75 286.2 198 67.2
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 3.3e-75 285.4 197 67.5
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 67.2
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 4.3e-75 285.0 198 68.7
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 4.3e-75 285.0 196 66.8
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 69.7
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.6e-74 283.1 198 66.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.8e-74 282.3 183 71.6
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.1e-73 280.4 199 68.3
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-73 280.4 183 72.7
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.1e-73 280.4 198 66.2
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.4e-73 280.0 198 66.2
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.4e-73 280.0 198 65.7
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 1.4e-73 280.0 186 73.1
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.8e-73 279.6 196 65.8
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.1e-73 278.9 184 70.7
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 63.1
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.0e-72 276.2 184 70.1
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.0e-72 276.2 184 70.1
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.6e-72 275.8 194 68.6
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.6e-72 275.8 186 71.5
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 4.5e-72 275.0 197 62.9
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 5.8e-72 274.6 198 62.1
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 7.6e-72 274.2 199 65.8
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 9.9e-72 273.9 196 65.8
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.3e-71 273.5 183 68.3
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 8.4e-71 270.8 186 69.9
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 5.5e-70 268.1 189 65.6
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.6e-69 266.5 195 65.6
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 3.5e-69 265.4 178 68.0
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.8e-68 263.1 198 63.6
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 5.1e-68 261.5 199 61.8
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.5e-67 260.0 196 65.8
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 4.3e-67 258.5 198 62.1
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 2.4e-65 252.7 198 61.6
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 4.0e-65 251.9 187 62.6
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 2.9e-63 245.7 183 64.5
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 6.5e-63 244.6 196 58.2
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.7e-61 239.2 183 63.4
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.5e-59 232.6 143 74.8
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 3.3e-59 232.3 170 64.7
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.8e-58 229.2 169 63.3
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 3.7e-58 228.8 144 68.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 2.0e-56 223.0 144 71.5
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.9e-54 216.5 187 55.1
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.7e-53 212.6 191 51.3
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.3e-52 209.5 144 65.3
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 3.9e-52 208.8 155 63.9
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.1e-51 207.2 198 53.5
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.5e-51 206.1 156 59.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.0e-47 194.1 198 48.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.9e-46 189.9 114 73.7
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 9.7e-43 177.6 198 49.5
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 3.7e-42 175.6 126 65.9
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 5.0e-39 165.2 97 74.2
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 5.0e-39 165.2 198 45.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 4.7e-37 158.7 190 42.6
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.7e-34 149.1 179 46.9
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 1.1e-30 137.5 181 41.4
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.8e-25 120.2 74 67.6
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 5.3e-25 118.6 113 54.0
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 5.0e-23 112.1 112 53.6
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 6.5e-23 111.7 68 73.5
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 6.5e-23 111.7 118 49.2
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.1e-22 110.9 194 39.2
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.5e-22 110.5 120 50.0
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 4.7e-21 105.5 185 33.5
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.8e-18 96.3 68 61.8
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.1e-17 92.8 64 59.4
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.1e-14 84.3 58 70.7
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 7.7e-08 61.6 40 67.5
Medtr0681s0020 Medicago truncatula HOM05D001868 ORTHO05D262664 7.3e-06 55.1 110 33.6
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 9.5e-06 54.7 35 68.6


User provided reference genes

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