Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025920001 Vitis vinifera HOM05D000372 ORTHO05D033928 1.3e-27 125.6 61 100.0
GSVIVG01036800001 Vitis vinifera HOM05D000372 ORTHO05D004502 6.3e-25 116.7 60 93.3
GSVIVG01036755001 Vitis vinifera HOM05D000372 ORTHO05D004502 3.1e-24 114.4 61 91.8
Prupe.7G170700 Prunus persica HOM05D000372 ORTHO05D004502 7.4e-18 93.2 48 95.8
TWI53G0045 Tripterygium wilfordii HOM05D000372 ORTHO05D004502 7.4e-18 93.2 48 95.8
GSVIVG01018749001 Vitis vinifera HOM05D000372 ORTHO05D004502 7.4e-18 93.2 48 95.8
Cfa006992 Carpinus fangiana HOM05D000372 ORTHO05D004502 1.3e-17 92.4 48 93.8
Haze_03739 Corylus avellana HOM05D000372 ORTHO05D004502 1.3e-17 92.4 48 93.8
QL06p050985 Quercus lobata HOM05D000372 ORTHO05D004502 1.3e-17 92.4 48 93.8
Dinv40109 Davidia involucrata HOM05D000372 ORTHO05D004502 2.2e-17 91.7 48 93.8
Hma1.2p1_0869F.1_g230760 Hydrangea macrophylla HOM05D000372 ORTHO05D004502 2.2e-17 91.7 48 93.8
Hma1.2p1_1306F.1_g274630 Hydrangea macrophylla HOM05D000372 ORTHO05D004502 2.2e-17 91.7 48 93.8
MD02G1128300 Malus domestica HOM05D000372 ORTHO05D004502 2.2e-17 91.7 48 93.8
TPR.G10518 Trifolium pratense HOM05D000372 ORTHO05D004502 2.2e-17 91.7 48 91.7
CAN.G1274.23 Capsicum annuum HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
COL.COLO4_22452 Corchorus olitorius HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
Duzib147G1045 Durio zibethinus HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
Manes.01G147600 Manihot esculenta HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 93.8
Manes.02G106100 Manihot esculenta HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 93.8
Peaxi162Scf00328g00717 Petunia axillaris HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
Potri.005G111700 Populus trichocarpa HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 93.8
Sabra07G0048400 Salix brachista HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 93.8
Solyc02g083670.4 Solanum lycopersicum HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
Sopen02g028450 Solanum pennellii HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
PGSC0003DMG400003578 Solanum tuberosum HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
Thecc.01G015600 Theobroma cacao HOM05D000372 ORTHO05D004502 2.8e-17 91.3 48 91.7
PGR119G2511 Punica granatum HOM05D000372 ORTHO05D004502 3.7e-17 90.9 48 91.7
RcHm_v2.0_Chr2g0099171 Rosa chinensis HOM05D000372 ORTHO05D004502 3.7e-17 90.9 48 91.7
CSS0039853 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
CANSAT25G3275 Cannabis sativa HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
Ca_24916_v3 Cicer arietinum L. HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 89.6
FvH4_1g11530 Fragaria vesca HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
FAN19G2794 Fragaria x ananassa HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
FAN23G0866 Fragaria x ananassa HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
FAN26G1228 Fragaria x ananassa HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
FAN28G0543 Fragaria x ananassa HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
MBI09_g13309_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
Nitab4.5_0001658g0020 Nicotiana tabacum HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 89.6
TWI73G1271 Tripterygium wilfordii HOM05D000372 ORTHO05D004502 4.8e-17 90.5 48 91.7
MELO3C013758.2 Cucumis melo HOM05D000372 ORTHO05D004502 6.3e-17 90.1 48 91.7
Eucgr.I02335 Eucalyptus grandis HOM05D000372 ORTHO05D004502 6.3e-17 90.1 47 91.5
Glyma.02G046600 Glycine max HOM05D000372 ORTHO05D004502 6.3e-17 90.1 47 93.6
Glyma.16G125100 Glycine max HOM05D000372 ORTHO05D004502 6.3e-17 90.1 47 93.6
Gohir.A02G171900 Gossypium hirsutum HOM05D000372 ORTHO05D004502 6.3e-17 90.1 48 89.6
Gorai.003G008400 Gossypium raimondii HOM05D000372 ORTHO05D004502 6.3e-17 90.1 48 89.6
Medtr5g022470 Medicago truncatula HOM05D000372 ORTHO05D004502 6.3e-17 90.1 48 89.6
Phvul.003G264600 Phaseolus vulgaris HOM05D000372 ORTHO05D004502 6.3e-17 90.1 47 93.6
Sed0009374 Sechium edule HOM05D000372 ORTHO05D004502 6.3e-17 90.1 48 91.7
TAR110G0002 Trochodendron aralioides HOM05D000372 ORTHO05D004502 6.3e-17 90.1 48 91.7
VMungo0251G1705 Vigna mungo HOM05D000372 ORTHO05D004502 6.3e-17 90.1 47 93.6
AL3G50850 Arabidopsis lyrata HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
AT2G17820 Arabidopsis thaliana HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
BcaB03g16556 Brassica carinata HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
BcaC06g36332 Brassica carinata HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
A07p03130 Brassica napus HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
C07p05260 Brassica napus HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
BolC7t40925H Brassica oleracea HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
BraA07t28109Z Brassica rapa HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
Carub.0003s3196 Capsella rubella HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
CARHR108230 Cardamine hirsuta HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
CiPaw.08G129700 Carya illinoinensis HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 89.6
Thhalv10022521m.g Eutrema salsugineum HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
Gohir.D11G045900 Gossypium hirsutum HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 89.6
Gorai.007G049200 Gossypium raimondii HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 89.6
Potri.007G056400 Populus trichocarpa HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
Sabra05G0091400 Salix brachista HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
Sp3g31280 Schrenkiella parvula HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
SpUn0082_0010 Schrenkiella parvula HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 91.7
Sc07g0001070 Simmondsia chinensis HOM05D000372 ORTHO05D004502 8.2e-17 89.7 47 91.5
TAR628G1126 Trochodendron aralioides HOM05D000372 ORTHO05D004502 8.2e-17 89.7 48 89.6
Aa31LG6G12940 Aethionema arabicum HOM05D000372 ORTHO05D004502 1.1e-16 89.4 50 90.0
Aa31LG8G15050 Aethionema arabicum HOM05D000372 ORTHO05D004502 1.1e-16 89.4 48 91.7
Duzib264G1133 Durio zibethinus HOM05D000372 ORTHO05D004502 1.1e-16 89.4 47 91.5
Migut.L00691 Erythranthe guttata HOM05D000372 ORTHO05D004502 1.1e-16 89.4 48 87.5
Gohir.A11G042400 Gossypium hirsutum HOM05D000372 ORTHO05D004502 1.1e-16 89.4 48 87.5
Nn6g32011 Nelumbo nucifera HOM05D000372 ORTHO05D004502 1.1e-16 89.4 69 69.6
Phvul.002G107100 Phaseolus vulgaris HOM05D000372 ORTHO05D004502 1.1e-16 89.4 47 91.5
Rhsim10G0210600 Rhododendron simsii HOM05D000372 ORTHO05D004502 1.1e-16 89.4 48 87.5
VMungo1215G2296 Vigna mungo HOM05D000372 ORTHO05D004502 1.1e-16 89.4 47 91.5
Cc07_g10990 Coffea canephora HOM05D000372 ORTHO05D004502 1.4e-16 89.0 48 89.6
Glyma.01G164800 Glycine max HOM05D000372 ORTHO05D004502 1.4e-16 89.0 47 91.5
Oeu014561.2 Olea europaea HOM05D000372 ORTHO05D004502 1.4e-16 89.0 48 87.5
Psat2g153400 Pisum sativum HOM05D000372 ORTHO05D004502 1.4e-16 89.0 48 87.5
Actinidia22958 Actinidia chinensis HOM05D000372 ORTHO05D004502 1.8e-16 88.6 48 89.6
Actinidia26542 Actinidia chinensis HOM05D000372 ORTHO05D004502 1.8e-16 88.6 48 89.6
CsaV3_3G000700 Cucumis sativus L. HOM05D000372 ORTHO05D004502 1.8e-16 88.6 48 89.6
Gohir.D03G008200 Gossypium hirsutum HOM05D000372 ORTHO05D004502 1.8e-16 88.6 48 87.5
Lj4A222T49 Lonicera japonica HOM05D000372 ORTHO05D004502 1.8e-16 88.6 48 89.6
Lj2g0023961 Lotus japonicus HOM05D000372 ORTHO05D004502 1.8e-16 88.6 47 89.4
Aqoxy6G02190 Aquilegia oxysepala HOM05D000372 ORTHO05D004502 2.4e-16 88.2 48 89.6
ClCG10G000620 Citrullus lanatus HOM05D000372 ORTHO05D004502 2.4e-16 88.2 48 89.6
MD15G1243500 Malus domestica HOM05D000372 ORTHO05D004502 2.4e-16 88.2 48 91.7
ATR0712G052 Amborella trichopoda HOM05D000372 ORTHO05D004502 3.1e-16 87.8 48 89.6
Ca_22392_v3 Cicer arietinum L. HOM05D000372 ORTHO05D004502 3.1e-16 87.8 47 89.4
Glyma.11G078300 Glycine max HOM05D000372 ORTHO05D004502 3.1e-16 87.8 47 89.4
Nn5g30757 Nelumbo nucifera HOM05D000372 ORTHO05D004502 3.1e-16 87.8 48 87.5
vmacro22145 Vaccinium macrocarpon HOM05D000372 ORTHO05D004502 3.1e-16 87.8 48 87.5
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 4.1e-16 87.4 48 87.5
Duzib187G1535 Durio zibethinus HOM05D000372 ORTHO05D004502 4.1e-16 87.4 48 87.5
Medtr8g075340 Medicago truncatula HOM05D000372 ORTHO05D004502 4.1e-16 87.4 47 89.4
Ah.03g149030 Amaranthus hybridus HOM05D000372 ORTHO05D004502 5.3e-16 87.0 48 87.5
arahy.Tifrunner.gnm1.ann1.15FVU2 Arachis hypogaea HOM05D000372 ORTHO05D004502 5.3e-16 87.0 47 89.4
arahy.Tifrunner.gnm1.ann1.L959U0 Arachis hypogaea HOM05D000372 ORTHO05D004502 5.3e-16 87.0 47 89.4
HanXRQChr14g0441821 Helianthus annuus HOM05D000372 ORTHO05D004502 5.3e-16 87.0 48 87.5
Lsat_1_v5_gn_2_75821 Lactuca sativa HOM05D000372 ORTHO05D004502 5.3e-16 87.0 48 87.5
THA.LOC104819744 Tarenaya hassleriana HOM05D000372 ORTHO05D004502 5.3e-16 87.0 48 89.6
Lsat_1_v5_gn_3_72520 Lactuca sativa HOM05D000372 ORTHO05D004502 6.9e-16 86.7 48 85.4
PSO541G0188 Papaver somniferum HOM05D000372 ORTHO05D004502 9.0e-16 86.3 48 87.5
PSO675G5056 Papaver somniferum HOM05D000372 ORTHO05D004502 9.0e-16 86.3 48 87.5
arahy.Tifrunner.gnm1.ann1.5M4X83 Arachis hypogaea HOM05D000372 ORTHO05D004502 1.2e-15 85.9 47 87.2
arahy.Tifrunner.gnm1.ann1.ZZ0D7Q Arachis hypogaea HOM05D000372 ORTHO05D004502 1.2e-15 85.9 47 87.2
CiPaw.07G060500 Carya illinoinensis HOM05D000372 ORTHO05D004502 1.2e-15 85.9 48 85.4
AUR62029486 Chenopodium quinoa HOM05D000372 ORTHO05D004502 1.2e-15 85.9 48 85.4
Lalb_Chr05g0229781 Lupinus albus HOM05D000372 ORTHO05D004502 1.2e-15 85.9 47 87.2
Lj4g0025702 Lotus japonicus HOM05D000372 ORTHO05D004502 1.5e-15 85.5 47 87.2
Psat4g101400 Pisum sativum HOM05D000372 ORTHO05D004502 2.0e-15 85.1 47 87.2
CSS0007471 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 3.4e-15 84.3 48 87.5
CSS0008893 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D004502 3.4e-15 84.3 48 87.5
TPR.G19487 Trifolium pratense HOM05D000372 ORTHO05D004502 3.4e-15 84.3 47 85.1
Lalb_Chr05g0212311 Lupinus albus HOM05D000372 ORTHO05D004502 4.5e-15 84.0 47 85.1
Nitab4.5_0001892g0050 Nicotiana tabacum HOM05D000372 ORTHO05D004502 5.9e-15 83.6 54 79.6
EL10Ac6g15493 Beta vulgaris HOM05D000372 ORTHO05D004502 1.0e-14 82.8 60 71.7
MSTRG.3608 Avicennia marina HOM05D000372 ORTHO05D004502 1.7e-14 82.0 48 81.2
SalBow5G2527 Salvia bowleyana HOM05D000372 ORTHO05D004502 1.7e-14 82.0 48 85.4
DCAR_010144 Daucus carota HOM05D000372 ORTHO05D004502 2.2e-14 81.6 48 81.2
HanXRQChr16g0531551 Helianthus annuus HOM05D000372 ORTHO05D004502 2.2e-14 81.6 48 81.2
ECA238G2015 Erigeron canadensis HOM05D000372 ORTHO05D004502 2.9e-14 81.3 48 81.2
Pp3c5_3880 Physcomitrium patens HOM05D000372 ORTHO05D004502 2.9e-14 81.3 48 72.9
Pp3c6_20120 Physcomitrium patens HOM05D000372 ORTHO05D004502 6.5e-14 80.1 48 72.9
Atru.chr3.840 Acer truncatum HOM05D000372 ORTHO05D004502 5.5e-13 77.0 47 76.6
AagrBONN_evm.TU.Sc2ySwM_117.2594 Anthoceros agrestis HOM05D000372 ORTHO05D004502 1.2e-12 75.9 48 68.8
Ciclev10024739m.g Citrus clementina HOM05D000372 ORTHO05D004502 2.1e-12 75.1 48 72.9
Mapoly0001s0444 Marchantia polymorpha HOM05D000372 ORTHO05D004502 2.1e-12 75.1 48 72.9
AUR62003350 Chenopodium quinoa HOM05D000372 ORTHO05D004502 2.7e-12 74.7 70 60.0
CBR_g31144 Chara braunii HOM05D000372 ORTHO05D001702 3.3e-10 67.8 48 66.7
SMO139G0100 Selaginella moellendorffii HOM05D000372 ORTHO05D004502 1.7e-09 65.5 48 64.6
CBR_g8523 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-09 65.1 48 60.4
CBR_g8519 Chara braunii HOM05D000372 ORTHO05D004502 8.2e-09 63.2 51 56.9
Pp3c10_3860 Physcomitrium patens HOM05D000372 ORTHO05D004502 1.1e-08 62.8 49 61.2
Pp3c18_2110 Physcomitrium patens HOM05D000372 ORTHO05D004502 2.4e-08 61.6 48 58.3
Pp3c21_21550 Physcomitrium patens HOM05D000372 ORTHO05D004502 2.4e-08 61.6 48 58.3
CBR_g8510 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-08 61.2 48 54.2
CSS0023296 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D033928 5.3e-08 60.5 34 85.3
CSS0024919 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D033928 1.5e-07 58.9 34 82.4
Mapoly0046s0066 Marchantia polymorpha HOM05D000372 ORTHO05D004502 1.5e-07 58.9 48 58.3
Pp3c7_17730 Physcomitrium patens HOM05D000372 ORTHO05D004502 2.0e-07 58.5 48 60.4
Mapoly0027s0156 Marchantia polymorpha HOM05D000372 ORTHO05D004502 2.6e-07 58.2 48 54.2
CBR_g8530 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-07 57.8 47 53.2
Pp3c2_16310 Physcomitrium patens HOM05D000372 ORTHO05D004502 5.9e-07 57.0 48 58.3


User provided reference genes

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