Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.3e-182 642.9 308 100.0
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.0e-168 595.1 307 90.9
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.8e-165 585.9 308 89.6
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 9.1e-165 583.6 308 89.6
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.7e-164 582.0 308 89.6
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 7.7e-164 580.5 308 88.3
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 2.2e-163 578.9 308 88.3
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 2.9e-163 578.6 308 88.3
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 5.0e-163 577.8 308 88.0
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.5e-162 576.2 299 90.6
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 1.9e-162 575.9 309 88.0
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 4.2e-162 574.7 308 87.0
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 5.5e-162 574.3 309 88.0
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 9.4e-162 573.5 306 88.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 2.1e-161 572.4 309 87.4
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.7e-161 572.0 304 87.5
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 3.6e-161 571.6 308 86.4
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 3.6e-161 571.6 309 88.0
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 4.7e-161 571.2 309 88.0
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 4.7e-161 571.2 308 86.0
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 8.0e-161 570.5 309 87.7
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.4e-160 569.7 308 87.0
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.8e-160 569.3 308 86.7
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 3.0e-160 568.5 308 85.7
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 6.8e-160 567.4 307 86.0
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.0e-159 565.8 308 86.4
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.6e-159 565.5 309 86.7
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.7e-159 564.3 302 87.4
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 5.7e-159 564.3 308 85.1
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 7.5e-159 563.9 308 86.4
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.3e-158 563.1 301 87.7
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.8e-158 562.0 299 88.0
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.8e-158 562.0 308 85.1
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.7e-158 561.6 308 85.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 8.3e-158 560.5 308 84.4
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 2.4e-157 558.9 308 84.7
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.4e-157 558.9 308 84.1
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 7.0e-157 557.4 308 84.7
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 7.0e-157 557.4 307 85.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 9.1e-157 557.0 308 84.4
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.2e-156 556.6 294 88.8
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 2.7e-156 555.4 305 84.6
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.7e-156 555.4 310 83.9
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 4.5e-156 554.7 296 85.8
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.5e-156 554.7 302 84.1
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.7e-156 553.9 300 87.3
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 7.7e-156 553.9 308 84.1
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 7.7e-156 553.9 308 84.1
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.3e-155 553.1 328 80.2
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 2.3e-155 552.4 301 85.0
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 5.0e-155 551.2 308 83.1
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 5.0e-155 551.2 304 84.9
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 6.5e-155 550.8 308 83.1
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 6.5e-155 550.8 308 83.8
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 8.6e-155 550.4 308 84.1
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.1e-154 550.1 307 82.7
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.5e-154 549.7 308 83.1
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.3e-154 548.5 308 82.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 3.3e-154 548.5 309 83.2
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 3.3e-154 548.5 308 82.5
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 4.2e-154 548.1 315 83.5
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-153 546.6 308 81.8
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 2.1e-153 545.8 308 82.8
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.1e-153 545.8 308 82.1
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 3.6e-153 545.0 302 83.8
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.7e-153 544.7 308 83.8
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-152 543.5 308 82.5
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.0e-152 543.5 296 85.1
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 1.4e-152 543.1 323 79.9
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.4e-152 543.1 309 82.8
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-152 542.7 310 82.3
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.8e-152 542.7 299 84.9
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.8e-152 542.7 308 82.1
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.0e-152 542.0 309 81.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.0e-152 541.6 298 84.6
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 5.2e-152 541.2 308 79.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 6.8e-152 540.8 309 82.2
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 8.9e-152 540.4 309 82.2
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-151 539.7 307 82.1
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-151 539.3 309 81.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 2.0e-151 539.3 309 81.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-151 538.1 305 82.3
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 4.4e-151 538.1 329 77.5
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 9.8e-151 537.0 308 79.9
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 9.8e-151 537.0 308 79.5
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.3e-150 536.6 308 79.2
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.7e-150 536.2 308 79.5
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.7e-150 536.2 310 81.9
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.4e-149 532.3 307 83.7
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.4e-149 531.2 307 81.4
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 7.0e-149 530.8 310 78.4
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 7.0e-149 530.8 308 78.6
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.6e-148 529.6 299 80.3
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 2.0e-148 529.3 299 81.6
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 4.5e-148 528.1 299 79.9
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.0e-147 526.9 303 82.2
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.3e-147 526.6 299 78.9
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.5e-146 523.1 308 80.5
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 3.3e-146 521.9 308 77.6
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 3.6e-145 518.5 296 79.7
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.8e-144 516.2 420 62.1
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 3.0e-144 515.4 299 80.3
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 5.2e-144 514.6 269 90.7
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 5.2e-144 514.6 306 78.4
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 2.0e-143 512.7 308 76.3
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.4e-143 511.9 324 76.5
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 3.7e-142 508.4 304 80.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 4.9e-134 481.5 328 71.6
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.2e-133 478.8 268 84.7
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 4.6e-132 474.9 279 81.4
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 7.8e-132 474.2 277 82.3
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.4e-125 453.4 260 80.4
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 6.2e-121 438.0 286 69.9
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.4e-119 431.8 282 70.9
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-116 423.3 303 71.3
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-115 420.2 274 75.5
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 5.1e-115 418.3 307 65.8
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.1e-113 412.9 244 79.1
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 2.4e-112 409.5 224 83.9
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.1e-108 396.4 299 63.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 6.2e-105 384.8 287 63.4
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 6.2e-105 384.8 198 89.9
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 3.5e-100 369.0 290 61.0
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.1e-97 359.8 230 71.3
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.8e-97 359.4 196 83.7
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.8e-94 349.0 294 57.5
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.0e-91 340.9 264 66.7
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 4.9e-86 322.0 288 57.3
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 1.9e-85 320.1 168 89.9
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 2.6e-79 299.7 159 86.2
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.6e-68 263.8 230 58.3
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.9e-61 240.4 131 82.4
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 5.5e-61 238.8 127 85.0
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.0e-56 221.9 262 49.2
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 6.5e-54 215.3 146 72.6
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.2e-47 194.5 146 67.8
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-46 191.0 100 86.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 4.2e-45 186.0 146 66.4
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.1e-40 169.5 95 75.8
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 3.5e-39 166.4 146 58.9
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.3e-37 159.8 110 67.3
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.0e-30 138.3 72 88.9
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 5.0e-22 109.4 67 74.6
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.9e-21 107.5 57 84.2
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.0e-19 99.8 67 70.1
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.0e-19 99.8 67 70.1
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.0e-19 99.8 64 75.0
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 9.2e-16 88.6 44 86.4
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.1e-15 87.4 44 86.4
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 3.5e-15 86.7 43 88.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 6.6e-14 82.4 41 87.8
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.6e-12 77.8 35 94.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 9.9e-10 68.6 37 89.2
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 3.2e-08 63.5 58 55.2
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 3.9e-06 56.6 35 77.1
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 5.1e-06 56.2 51 52.9
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 8.6e-06 55.5 116 27.6


User provided reference genes

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