Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 4.2e-74 281.2 135 100.0
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 4.7e-49 198.0 138 73.9
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 5.4e-45 184.5 136 67.6
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 1.6e-44 183.0 133 67.7
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 2.3e-43 179.1 142 66.9
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 5.2e-40 167.9 162 53.7
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 1.5e-39 166.4 145 60.0
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 2.0e-39 166.0 142 64.1
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 1.3e-38 163.3 133 58.6
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 2.9e-38 162.2 137 61.3
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 2.9e-38 162.2 142 59.2
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 5.4e-37 157.9 142 58.5
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.1e-37 157.5 142 59.2
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 1.2e-36 156.8 120 63.3
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 1.6e-36 156.4 133 58.6
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 2.1e-36 156.0 141 61.7
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.8e-36 154.1 143 56.6
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.1e-34 150.2 136 60.3
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 1.5e-34 149.8 139 57.6
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 2.5e-34 149.1 141 61.0
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 7.3e-34 147.5 120 66.7
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 1.6e-33 146.4 117 62.4
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 8.1e-33 144.1 140 57.1
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 1.1e-32 143.7 148 56.8
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 4.0e-32 141.7 149 53.7
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 1.1e-29 133.7 139 56.8
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 1.9e-29 132.9 156 51.3
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 2.4e-29 132.5 141 51.8
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 3.2e-29 132.1 141 51.8
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 5.4e-29 131.3 138 58.0
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 5.4e-29 131.3 136 57.4
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 7.1e-29 131.0 136 56.6
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 7.1e-29 131.0 134 52.2
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 2.1e-28 129.4 145 53.1
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 2.1e-28 129.4 138 57.2
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 4.6e-28 128.3 113 58.4
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.8e-28 127.5 200 40.0
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 2.3e-27 125.9 115 60.0
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 5.1e-27 124.8 164 50.6
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 5.1e-27 124.8 103 61.2
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 6.6e-27 124.4 118 53.4
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 8.7e-27 124.0 141 53.9
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 1.5e-26 123.2 132 53.0
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 1.5e-26 123.2 143 49.7
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 4.3e-26 121.7 143 48.3
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 5.6e-26 121.3 117 60.7
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 1.3e-25 120.2 115 60.0
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 2.4e-24 115.9 138 47.1
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 3.1e-24 115.5 167 43.1
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 3.1e-24 115.5 148 48.6
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.2e-23 113.6 162 43.8
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 1.5e-23 113.2 168 41.1
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 2.0e-23 112.8 127 55.1
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 7.6e-23 110.9 150 45.3
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 1.7e-22 109.8 92 60.9
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 2.9e-22 109.0 138 47.1
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 4.9e-22 108.2 168 42.9
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 4.9e-22 108.2 165 43.6
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 1.4e-21 106.7 163 41.1
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 1.4e-21 106.7 113 51.3
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 3.2e-21 105.5 155 45.2
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 4.2e-21 105.1 155 43.2
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 4.2e-21 105.1 155 43.2
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 7.1e-21 104.4 170 40.6
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 9.3e-21 104.0 155 45.2
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 9.3e-21 104.0 106 57.5
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 2.1e-20 102.8 143 49.7
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 2.3e-19 99.4 125 48.8
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 3.0e-19 99.0 171 36.8
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 3.9e-19 98.6 155 41.3
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 5.1e-19 98.2 166 39.2
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 1.5e-18 96.7 138 42.8
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 7.4e-18 94.4 136 45.6
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 9.6e-18 94.0 115 51.3
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 5.3e-16 88.2 137 43.8
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 2.2e-14 82.8 147 38.8
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 3.2e-13 79.0 135 43.0
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 7.1e-13 77.8 135 43.0
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 9.3e-13 77.4 145 37.2
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 2.1e-12 76.3 141 38.3
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 3.5e-12 75.5 135 35.6
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 3.5e-12 75.5 111 43.2
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 1.0e-11 73.9 133 40.6
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.1e-10 70.5 149 35.6
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.9e-10 69.7 149 34.9
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.3e-10 68.9 146 32.9
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 7.4e-10 67.8 140 31.4
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 9.6e-10 67.4 146 33.6
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.1e-09 66.2 146 32.9
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.1e-09 66.2 146 32.9
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 2.8e-09 65.9 154 31.2
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.7e-09 65.5 139 37.4
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 3.7e-09 65.5 131 32.8
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 4.8e-09 65.1 145 34.5
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 8.2e-09 64.3 94 39.4
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 8.2e-09 64.3 120 35.8
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 1.1e-08 63.9 164 30.5
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.1e-08 63.9 148 32.4
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 1.1e-08 63.9 144 31.9
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.8e-08 63.2 150 32.7
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 2.4e-08 62.8 128 32.0
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.1e-08 62.4 145 35.9
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.1e-08 62.4 140 32.9
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.1e-08 62.4 141 34.8
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.3e-08 61.6 145 31.0
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 5.3e-08 61.6 95 38.9
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 6.9e-08 61.2 148 31.8
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 9.0e-08 60.8 160 32.5
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 9.0e-08 60.8 146 31.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 9.0e-08 60.8 147 31.3
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 9.0e-08 60.8 144 31.9
BraA05t22411Z Brassica rapa HOM05D001472 ORTHO05D007811 1.2e-07 60.5 126 38.1
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.2e-07 60.5 141 34.8
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 1.2e-07 60.5 147 32.7
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.5e-07 60.1 145 33.8
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.0e-07 59.7 160 31.9
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.0e-07 59.7 144 33.3
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.0e-07 59.7 136 39.7
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 2.6e-07 59.3 146 30.1
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 2.6e-07 59.3 149 32.2
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 2.6e-07 59.3 141 33.3
BolC5t34105H Brassica oleracea HOM05D001472 ORTHO05D007811 3.4e-07 58.9 121 37.2
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.4e-07 58.9 148 31.1
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 4.5e-07 58.5 162 32.1
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 5.8e-07 58.2 119 36.1
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.8e-07 58.2 148 31.1
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.8e-07 58.2 148 31.8
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 5.8e-07 58.2 148 31.8
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 5.8e-07 58.2 144 31.2
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 7.6e-07 57.8 141 34.0
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 7.6e-07 57.8 142 31.0
TAR381G0583 Trochodendron aralioides HOM05D000488 ORTHO05D000347 1.0e-06 57.4 68 50.0
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.3e-06 57.0 144 29.9
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 1.3e-06 57.0 150 32.0
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.7e-06 56.6 146 32.2
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 1.7e-06 56.6 158 30.4
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 2.2e-06 56.2 153 33.3
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.2e-06 56.2 145 32.4
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 2.9e-06 55.8 51 56.9
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.9e-06 55.8 148 28.4
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.8e-06 55.5 146 31.5
CDE07G1735 Ceratophyllum demersum HOM05D007392 ORTHO05D009181 3.8e-06 55.5 82 43.9
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 3.8e-06 55.5 149 31.5
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 3.8e-06 55.5 142 30.3
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 3.8e-06 55.5 152 30.9
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 3.8e-06 55.5 146 32.2
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 3.8e-06 55.5 146 32.2
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 4.9e-06 55.1 116 37.9
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 4.9e-06 55.1 150 32.0
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 4.9e-06 55.1 146 31.5
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 4.9e-06 55.1 136 30.9
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.9e-06 55.1 140 30.0
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 6.5e-06 54.7 151 32.5
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 6.5e-06 54.7 135 34.8
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 6.5e-06 54.7 149 32.9
C03p46410 Brassica napus HOM05D007392 ORTHO05D009181 8.4e-06 54.3 44 59.1
CARHR045140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 8.4e-06 54.3 68 50.0
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 8.4e-06 54.3 154 29.9
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 8.4e-06 54.3 148 31.8
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 8.4e-06 54.3 144 32.6
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 8.4e-06 54.3 144 30.6
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 8.4e-06 54.3 152 34.2


User provided reference genes

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