Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 7.7e-139 497.3 277 100.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 6.8e-127 457.6 277 90.3
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 6.8e-127 457.6 277 91.7
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 91.7
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 90.6
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.3
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.3
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 89.2
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 89.2
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 90.3
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 90.3
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 89.2
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 88.8
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 88.8
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.2e-124 448.7 277 89.9
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 89.5
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 89.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 88.8
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 89.5
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 7.0e-124 447.6 277 89.2
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 89.9
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 89.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 88.1
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.0e-123 446.0 277 89.2
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 89.2
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 88.8
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 88.8
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 88.4
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 88.8
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.4
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.4
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 88.1
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 88.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.8
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 87.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 87.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 87.7
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.9e-121 439.5 276 88.8
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 88.1
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 88.1
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 87.4
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 86.3
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 86.3
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 87.0
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 85.6
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 87.4
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 85.2
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 86.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 87.0
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 86.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.8e-119 433.0 276 87.0
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 87.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 87.7
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 84.5
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 4.0e-119 431.8 274 85.0
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 84.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.5e-118 429.9 274 84.7
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 85.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.6e-118 429.1 301 81.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 4.4e-118 428.3 278 85.6
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 83.8
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.8e-118 427.9 283 84.8
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 86.3
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 86.6
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.9e-117 425.6 261 90.4
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 86.6
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.9e-116 422.9 321 76.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 83.6
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 83.6
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.2e-115 420.2 275 83.6
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.7e-115 419.1 277 81.2
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 4.6e-115 418.3 277 85.9
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 7.8e-115 417.5 261 88.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.3e-114 416.0 261 88.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.1e-113 413.7 280 83.2
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.2e-112 410.2 318 73.9
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.2e-112 410.2 277 84.1
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.1e-112 409.5 278 83.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-112 408.7 320 75.3
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 2.3e-111 406.0 277 81.2
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.0e-111 405.2 277 81.6
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.2e-110 403.7 274 82.8
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.6e-110 402.5 299 74.2
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 4.4e-110 401.7 270 84.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.7e-109 399.8 275 81.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 6.4e-109 397.9 318 69.8
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 5.4e-108 394.8 278 79.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 9.2e-108 394.0 273 79.5
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 6.0e-107 391.3 274 74.8
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 6.0e-107 391.3 256 83.2
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.0e-107 391.3 278 79.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 5.1e-106 388.3 255 86.7
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 5.1e-106 388.3 278 79.5
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 5.1e-106 388.3 277 79.8
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.3e-105 385.6 269 75.8
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 5.6e-105 384.8 264 83.0
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.4e-103 380.2 282 78.4
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.2e-102 377.1 256 82.4
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.5e-102 376.7 262 80.9
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.0e-102 376.3 353 61.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-102 375.9 260 82.3
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.7e-101 372.1 275 77.1
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 7.1e-100 367.9 331 69.5
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.1e-99 366.3 230 87.8
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.6e-96 356.7 230 87.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.4e-95 353.6 222 89.6
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.5e-94 350.1 222 88.3
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 6.0e-91 338.2 277 65.3
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 7.8e-91 337.8 268 71.6
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.7e-90 336.7 250 78.4
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.7e-90 336.7 250 78.4
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.6e-88 330.1 277 66.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.3e-87 325.1 313 63.9
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 4.4e-86 322.0 281 65.8
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.4e-86 322.0 224 83.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 5.8e-86 321.6 275 65.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-85 318.9 274 69.7
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.2e-84 315.5 274 69.3
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 4.2e-84 315.5 283 65.7
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 4.8e-72 275.4 258 61.6
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 5.8e-70 268.5 187 81.3
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.3e-65 252.3 274 54.0
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-64 250.8 278 54.7
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 3.3e-57 226.1 181 75.7
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 9.7e-57 224.6 138 85.5
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 6.3e-56 221.9 156 72.4
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.4e-55 219.9 145 86.2
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.8e-53 212.6 129 84.5
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 8.5e-53 211.5 132 83.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-47 194.5 300 45.3
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 4.7e-43 179.1 97 93.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.8e-42 177.2 106 85.8
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.7e-40 170.6 90 95.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 4.7e-35 152.5 84 90.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.7e-34 148.7 155 59.4
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-30 137.1 74 93.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.0e-30 137.1 74 93.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.2e-29 133.7 80 81.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.1e-28 131.3 80 81.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 9.1e-23 111.7 264 36.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 5.0e-21 105.9 162 45.7
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 8.0e-19 98.6 149 47.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.0e-18 96.7 164 39.6
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-18 96.3 104 56.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.8e-18 95.5 71 87.3
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 8.8e-18 95.1 176 40.3
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.4e-17 93.2 147 39.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.4e-17 92.8 57 78.9
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.2e-16 90.5 71 80.3
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 6.3e-16 89.0 158 39.9
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.8e-15 87.4 73 68.5
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.0e-13 81.6 155 34.2
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-13 80.5 46 87.0
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 8.6e-13 78.6 46 80.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-12 76.3 46 82.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-11 74.3 157 38.9
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.8e-10 70.9 263 30.4
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.8e-10 70.9 43 79.1
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.3e-10 70.5 332 26.5
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.2e-08 63.9 140 41.4


User provided reference genes

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