Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.3e-92 341.3 168 100.0
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.3e-77 293.1 168 82.7
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.3e-77 292.4 168 82.1
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.3e-76 288.5 166 83.7
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.3e-76 288.1 168 80.4
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.3e-75 286.6 168 80.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.6e-75 286.2 168 81.5
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.8e-75 285.4 168 79.2
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.1e-74 282.0 168 79.2
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.0e-74 281.6 171 80.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.2e-73 280.0 168 80.4
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 4.5e-73 278.1 168 79.8
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 7.6e-73 277.3 168 79.2
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.7e-72 276.2 166 77.1
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 3.8e-72 275.0 170 76.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.8e-72 275.0 165 79.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 6.5e-72 274.2 169 79.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 8.4e-72 273.9 167 79.0
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.1e-71 273.5 167 77.2
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.4e-71 273.1 169 77.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.4e-71 273.1 168 76.8
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.9e-71 272.7 168 81.0
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.2e-71 271.6 168 76.2
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.2e-71 271.6 168 76.2
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 4.6e-70 268.1 169 77.5
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.0e-69 266.9 168 76.8
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.3e-69 266.5 169 75.7
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.8e-69 266.2 168 77.4
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.0e-69 265.4 172 76.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.9e-69 265.0 168 77.4
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.9e-69 265.0 170 74.7
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 8.7e-69 263.8 168 75.6
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.5e-68 263.1 168 73.8
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.5e-68 263.1 170 74.1
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.5e-68 263.1 169 72.8
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.5e-68 262.3 168 75.0
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 4.3e-68 261.5 161 75.8
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 7.4e-68 260.8 168 76.8
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.6e-67 259.6 168 75.0
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.1e-67 259.2 168 74.4
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.8e-67 258.8 168 74.4
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 2.8e-67 258.8 168 75.0
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 3.7e-67 258.5 168 78.0
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.7e-67 258.5 168 73.8
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.8e-67 258.1 168 74.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.1e-66 256.9 168 74.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.4e-66 256.5 168 73.8
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-66 256.5 168 73.8
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.8e-66 256.1 168 73.8
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.4e-66 255.8 168 72.6
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 2.4e-66 255.8 168 73.8
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.3e-66 254.6 168 72.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 9.0e-66 253.8 168 72.0
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.0e-66 253.8 174 71.3
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.0e-65 252.7 168 72.0
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.4e-65 251.9 168 70.2
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 7.6e-65 250.8 168 73.8
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.3e-64 250.0 175 72.6
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.3e-64 250.0 161 75.8
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.3e-64 250.0 166 74.7
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.7e-64 249.6 162 72.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 8.4e-64 247.3 166 73.5
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.1e-63 246.9 171 70.2
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.5e-63 245.7 170 71.8
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.5e-63 245.7 168 75.6
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 4.2e-63 245.0 169 71.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.2e-63 245.0 145 80.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.1e-62 242.7 168 70.8
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.1e-62 241.1 152 76.3
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.0e-61 240.4 169 69.8
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.3e-61 240.0 155 72.9
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.7e-61 237.3 158 73.4
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.1e-60 236.9 169 67.5
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.5e-60 235.7 158 74.1
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.5e-60 235.7 168 71.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.5e-60 235.7 168 71.4
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.3e-60 235.3 169 69.2
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.7e-60 234.6 158 73.4
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.6e-59 233.0 169 68.6
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.2e-59 232.6 169 69.2
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 6.3e-59 231.1 169 66.9
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 8.2e-59 230.7 166 68.7
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-58 230.3 166 68.7
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.4e-58 229.9 146 72.6
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.8e-58 229.6 161 67.1
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 3.1e-58 228.8 168 64.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.1e-58 228.8 169 69.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.5e-57 226.5 165 63.0
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.5e-57 226.5 168 70.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 3.4e-57 225.3 160 70.0
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.5e-57 224.9 150 71.3
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.7e-57 224.2 185 61.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-56 223.4 169 65.1
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.7e-56 223.0 166 68.1
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-56 222.6 169 64.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.9e-56 222.2 168 63.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.9e-56 222.2 168 63.7
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 2.9e-56 222.2 169 64.5
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.9e-56 222.2 168 63.7
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.0e-56 221.5 169 66.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-55 220.3 169 63.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.4e-55 219.9 168 66.1
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.4e-55 219.9 152 68.4
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 5.5e-55 218.0 137 73.0
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 7.2e-55 217.6 140 71.4
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.4e-55 217.2 152 72.4
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.2e-54 216.9 164 65.2
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-54 216.9 167 64.1
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.2e-54 216.9 163 64.4
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.1e-54 216.1 165 61.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.7e-54 215.7 147 71.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 2.7e-54 215.7 168 63.1
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.6e-54 214.9 180 61.1
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 4.6e-54 214.9 150 67.3
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.0e-53 213.8 169 64.5
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.0e-53 213.8 135 72.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.4e-53 213.4 182 58.8
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.4e-53 213.4 198 59.6
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.8e-53 213.0 171 59.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.0e-53 212.2 140 71.4
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.9e-53 211.8 166 66.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 5.1e-53 211.5 169 63.9
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 6.7e-53 211.1 165 61.8
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-52 210.3 191 57.6
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.1e-52 210.3 180 59.4
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.5e-52 209.9 135 71.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 9.7e-52 207.2 168 60.1
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 9.7e-52 207.2 164 64.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 9.7e-52 207.2 164 64.0
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.3e-51 204.5 168 60.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.3e-51 204.5 164 62.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.2e-51 204.1 162 59.9
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.2e-51 204.1 162 59.9
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.1e-50 203.8 143 67.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.4e-50 202.6 162 62.3
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.4e-50 202.6 168 59.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 3.1e-50 202.2 161 61.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 9.1e-50 200.7 161 63.4
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.0e-49 199.5 144 63.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.6e-49 199.1 160 57.5
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.4e-49 198.7 160 58.1
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 4.5e-49 198.4 160 58.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.9e-48 195.7 162 59.3
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.9e-48 195.7 162 56.8
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 5.0e-48 194.9 130 70.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.9e-47 193.0 161 60.2
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 4.2e-47 191.8 153 57.5
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.2e-46 190.3 166 55.4
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.1e-46 189.5 163 55.8
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.9e-46 187.6 160 54.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.0e-45 187.2 116 74.1
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.8e-45 186.4 158 53.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.3e-45 186.0 168 59.5
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.0e-45 185.7 160 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 5.1e-45 184.9 163 55.2
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.0e-44 183.0 163 52.8
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.3e-44 182.2 156 57.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.4e-44 181.8 127 69.3
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 4.4e-44 181.8 123 68.3
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.7e-43 179.9 159 56.0
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.6e-41 173.3 167 58.7
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.0e-40 170.6 170 57.1
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.6e-38 163.3 106 66.0
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 2.1e-38 162.9 143 58.0
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.0e-37 160.6 170 54.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 5.2e-37 158.3 123 56.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 6.7e-37 157.9 171 49.1
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.1e-34 150.6 219 45.2
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.1e-34 150.6 82 86.6
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.1e-30 136.3 105 63.8
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 4.7e-30 135.2 157 51.0
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.8e-29 131.3 88 70.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-27 127.1 173 46.8
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.3e-27 127.1 173 46.8
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 8.3e-27 124.4 169 45.0
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.7e-22 108.6 88 63.6
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 2.7e-17 92.8 54 75.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.1e-15 87.4 52 76.9
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.6e-08 61.6 54 59.3


User provided reference genes

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