Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 5.7e-204 714.1 390 100.0
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.9e-146 523.1 286 83.9
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 3.6e-142 508.8 285 82.1
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 8.1e-142 507.7 286 83.6
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 8.1e-142 507.7 335 74.6
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.3e-141 506.1 285 81.1
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.2e-140 503.8 294 80.6
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.2e-140 503.8 284 81.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.6e-140 502.7 285 83.2
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 2.6e-140 502.7 285 83.2
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 4.4e-140 501.9 285 82.1
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 9.8e-140 500.7 332 74.4
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.8e-140 500.7 284 79.9
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.7e-139 500.0 283 82.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.7e-139 500.0 335 73.7
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 6.4e-139 498.0 285 82.1
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 5.4e-138 495.0 285 80.7
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 5.4e-138 495.0 285 81.4
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.2e-137 493.8 332 73.2
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 2.7e-137 492.7 341 71.3
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.3e-136 490.3 283 79.9
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 3.9e-136 488.8 304 75.7
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 5.1e-136 488.4 261 85.4
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 5.1e-136 488.4 308 73.7
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 6.6e-136 488.0 336 70.5
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 8.6e-136 487.6 333 72.4
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.5e-135 486.9 290 77.6
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.5e-135 486.1 346 67.6
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 2.5e-135 486.1 264 84.1
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 2.5e-135 486.1 282 80.9
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 3.3e-135 485.7 261 85.1
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.3e-135 485.3 286 80.4
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.6e-135 485.0 287 79.4
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 9.5e-135 484.2 264 84.1
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.6e-134 483.4 327 73.1
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.1e-134 483.0 265 83.4
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.8e-134 482.6 287 79.1
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 4.7e-134 481.9 280 80.7
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 8.1e-134 481.1 259 83.8
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 8.1e-134 481.1 262 82.1
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.4e-133 480.3 336 72.3
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 4.0e-133 478.8 291 76.6
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.2e-132 477.2 262 81.3
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.5e-132 476.9 335 69.9
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 2.0e-132 476.5 283 78.1
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.6e-132 476.1 265 82.6
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 4.4e-132 475.3 283 77.4
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 7.6e-132 474.6 333 70.6
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 7.6e-132 474.6 262 82.1
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.2e-131 473.0 328 70.1
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 2.9e-131 472.6 264 81.8
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 3.7e-131 472.2 262 80.5
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 3.7e-131 472.2 263 82.9
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 8.4e-131 471.1 341 70.1
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 8.4e-131 471.1 341 68.0
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.1e-130 470.7 263 81.4
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 1.4e-130 470.3 348 68.1
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-130 470.3 296 75.0
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.9e-130 469.9 336 69.0
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.9e-130 469.9 346 67.6
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 4.1e-130 468.8 353 66.3
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 5.4e-130 468.4 348 67.8
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 7.1e-130 468.0 256 80.5
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.2e-129 467.2 283 76.3
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.2e-129 467.2 294 74.1
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 2.1e-129 466.5 288 75.3
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.1e-129 466.5 270 78.5
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 3.5e-129 465.7 283 76.0
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 4.6e-129 465.3 286 76.2
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 4.6e-129 465.3 283 75.6
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 1.0e-128 464.2 293 73.7
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.0e-128 464.2 280 76.1
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.3e-128 463.8 281 75.1
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 3.0e-128 462.6 324 67.9
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.9e-128 462.2 332 68.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 3.9e-128 462.2 259 82.6
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 6.6e-128 461.5 292 74.7
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.5e-127 459.5 339 68.7
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.8e-126 456.1 330 68.2
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.8e-126 456.1 295 74.2
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 2.8e-126 456.1 347 65.7
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 3.6e-126 455.7 259 81.1
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 8.1e-126 454.5 284 74.6
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.4e-125 453.0 269 79.2
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 3.1e-125 452.6 286 74.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 3.1e-125 452.6 287 74.9
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 4.0e-125 452.2 284 74.3
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 6.8e-125 451.4 240 85.4
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 8.9e-125 451.1 259 78.8
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 8.9e-125 451.1 308 69.5
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 8.9e-125 451.1 259 79.2
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 2.6e-124 449.5 286 74.1
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 5.8e-124 448.4 265 78.5
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 3.8e-123 445.7 256 79.3
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.4e-122 443.0 293 72.7
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 4.2e-122 442.2 316 68.7
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 4.2e-122 442.2 290 72.4
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 5.4e-122 441.8 240 83.8
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 5.4e-122 441.8 257 78.2
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 1.7e-120 436.8 279 74.2
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.3e-120 436.4 260 77.7
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.3e-120 436.4 315 68.3
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.3e-120 436.4 393 58.0
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 3.0e-120 436.0 261 77.4
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 5.1e-120 435.3 288 70.8
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.8e-118 429.5 302 68.2
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.4e-117 426.4 330 64.5
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 7.6e-116 421.4 294 69.4
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 3.8e-115 419.1 377 56.5
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 5.4e-114 415.2 284 72.2
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 2.1e-113 413.3 284 70.8
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 3.3e-111 406.0 315 63.2
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.5e-108 397.1 315 62.2
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.9e-106 390.2 263 71.1
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.3e-101 372.1 211 77.3
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 5.8e-100 368.6 202 80.2
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.5e-98 362.1 300 58.3
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.5e-98 362.1 319 56.1
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 9.6e-95 351.3 184 85.9
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.4e-93 347.4 323 53.6
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.5e-90 335.5 293 58.0
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.7e-86 322.8 199 76.9
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.6e-84 316.6 276 58.0
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.0e-83 314.7 258 60.9
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 2.2e-83 313.5 194 76.8
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 5.0e-83 312.4 177 82.5
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.9e-82 310.5 262 64.1
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.9e-82 310.5 262 64.1
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 9.4e-82 308.1 205 74.1
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.8e-80 303.9 173 80.9
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.1e-79 301.2 194 74.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.0e-79 300.4 295 56.6
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 4.8e-78 295.8 282 55.7
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 3.9e-72 276.2 252 59.1
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 9.7e-71 271.6 303 49.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.4e-69 267.7 234 56.4
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.6e-68 263.5 315 46.0
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 9.4e-66 255.0 253 50.6
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.4e-61 241.1 203 62.1
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.4e-61 241.1 191 60.7
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.6e-57 227.6 151 75.5
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 3.0e-56 223.4 187 64.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 8.8e-56 221.9 183 65.0
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 3.1e-53 213.4 179 57.0
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 5.4e-53 212.6 230 50.0
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 5.9e-52 209.1 223 47.5
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-45 188.3 227 45.4
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 1.4e-45 188.0 249 43.8
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 4.4e-39 166.4 128 61.7
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 7.5e-39 165.6 124 61.3
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 5.9e-36 156.0 91 75.8
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.7e-30 136.7 81 71.6
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-17 94.4 50 74.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 2.1e-17 94.4 50 74.0
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 5.8e-15 86.3 54 70.4
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.2e-07 62.0 165 28.5
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 9.9e-07 58.9 148 27.0
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 1.7e-06 58.2 86 39.5
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 8.4e-06 55.8 158 27.8


User provided reference genes

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