Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 6.6e-293 1010.0 513 100.0
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 6.1e-198 694.5 514 71.0
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 3.0e-197 692.2 513 70.2
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.2e-193 680.2 514 70.6
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.6e-193 679.9 509 70.3
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 2.0e-193 679.5 515 70.1
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 4.7e-190 668.3 513 69.0
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 2.3e-189 666.0 490 69.8
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.2e-188 663.7 515 68.2
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.7e-187 659.8 515 68.0
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.2e-187 659.4 513 67.3
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 9.1e-186 654.1 514 67.3
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 1.1e-183 647.1 513 67.1
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.5e-183 646.7 456 73.5
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 7.2e-183 644.4 517 66.9
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 2.1e-182 642.9 517 67.1
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.1e-182 642.9 516 66.9
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 3.6e-182 642.1 513 65.7
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.6e-182 642.1 517 66.9
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.7e-182 641.7 508 66.7
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 6.1e-182 641.3 517 66.9
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.8e-181 639.8 607 57.7
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 2.3e-181 639.4 513 66.1
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 3.0e-181 639.0 512 65.6
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.2e-180 637.1 513 66.1
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 1.2e-180 637.1 499 67.5
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.7e-179 633.3 517 67.3
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.7e-179 633.3 515 64.7
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.1e-178 628.6 508 65.2
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.6e-177 626.7 510 65.7
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 5.9e-177 624.8 520 63.7
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 7.8e-177 624.4 513 64.1
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.3e-176 623.6 494 67.0
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.3e-176 623.6 513 65.7
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.7e-176 623.2 513 66.1
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.9e-175 619.8 506 65.2
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 3.3e-175 619.0 508 63.4
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.3e-175 619.0 513 65.1
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 9.5e-175 617.5 507 64.7
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.2e-174 617.1 519 63.6
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.6e-174 616.7 513 65.7
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.8e-174 615.9 503 64.8
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 3.6e-174 615.5 490 65.3
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.7e-174 615.1 519 63.2
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 6.2e-174 614.8 512 64.8
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 8.0e-174 614.4 514 65.4
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 8.0e-174 614.4 503 64.8
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.5e-172 610.1 509 62.1
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.6e-172 609.4 508 63.8
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.2e-171 606.3 464 67.2
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 7.0e-170 601.3 514 63.4
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 9.2e-170 600.9 515 61.6
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.2e-169 600.5 520 63.1
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 4.3e-167 592.0 518 62.7
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 2.8e-166 589.3 514 60.9
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 5.2e-165 585.1 461 64.4
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 3.4e-164 582.4 465 63.7
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 4.4e-164 582.0 515 58.6
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.7e-163 580.1 514 59.9
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 6.4e-163 578.2 513 61.0
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 8.3e-163 577.8 504 60.9
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.4e-162 576.2 515 59.4
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 5.4e-162 575.1 462 65.2
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.6e-161 573.5 462 64.9
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.6e-161 573.5 495 61.8
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.7e-161 572.8 508 60.4
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 4.6e-161 572.0 494 60.9
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.1e-159 567.4 445 65.6
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.6e-158 563.5 513 59.3
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.7e-158 562.0 485 61.2
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 1.4e-157 560.5 512 60.0
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 6.8e-157 558.1 510 61.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 4.4e-156 555.4 445 64.0
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 7.6e-156 554.7 499 58.5
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 9.9e-156 554.3 448 65.2
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 5.1e-152 542.0 462 63.0
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 6.6e-152 541.6 522 56.7
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 6.6e-152 541.6 522 56.7
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 8.6e-152 541.2 516 56.4
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.5e-151 540.4 524 56.9
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.9e-151 540.0 524 56.7
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.9e-151 540.0 514 56.0
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.6e-151 538.5 513 55.9
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 1.2e-150 537.3 462 61.9
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 2.4e-149 533.1 429 64.3
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 6.8e-149 531.6 500 58.2
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.6e-148 529.6 513 55.6
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 5.8e-148 528.5 514 55.1
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 7.6e-148 528.1 523 56.4
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.3e-147 527.3 438 63.7
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.4e-146 523.9 512 57.2
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.9e-146 523.5 515 54.8
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 3.2e-146 522.7 522 55.4
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 4.2e-146 522.3 499 56.9
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 9.3e-146 521.2 455 61.8
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 3.9e-144 515.8 523 54.7
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 6.6e-144 515.0 478 56.7
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 2.5e-143 513.1 469 58.6
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 4.3e-143 512.3 468 58.3
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 8.1e-142 508.1 515 55.0
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 3.1e-141 506.1 486 56.2
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 3.1e-141 506.1 526 54.6
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 6.9e-141 505.0 522 53.6
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 5.8e-140 501.9 434 60.8
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.1e-138 497.7 497 54.1
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 3.2e-138 496.1 497 54.1
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 3.2e-138 496.1 502 53.2
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 3.0e-136 489.6 494 53.8
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.1e-135 487.6 423 60.3
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 2.6e-132 476.5 474 54.6
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 3.4e-132 476.1 512 53.9
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.2e-130 469.5 422 62.6
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 3.0e-128 463.0 402 62.7
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 5.6e-127 458.8 492 52.4
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 3.7e-126 456.1 426 57.0
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.0e-123 448.0 439 58.8
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 4.3e-119 432.6 498 51.2
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 2.1e-118 430.3 393 60.1
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 8.2e-118 428.3 309 67.0
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 5.0e-115 419.1 471 53.3
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.5e-113 412.9 488 49.4
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 3.9e-112 409.5 323 64.4
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 5.0e-107 392.5 340 58.8
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.5e-103 380.9 395 54.7
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 4.8e-102 375.9 461 46.0
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 6.1e-97 359.0 318 59.1
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.2e-91 340.5 203 78.8
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 6.5e-91 339.0 492 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.6e-87 327.0 483 39.5
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 8.0e-81 305.4 315 55.2
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 4.0e-80 303.1 304 54.3
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 3.7e-78 296.6 230 63.0
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 7.2e-74 282.3 289 51.6
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 9.8e-71 271.9 179 70.9
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 4.9e-70 269.6 249 62.7
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.7e-67 261.2 493 35.7
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 8.3e-54 215.7 203 56.7
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 4.6e-52 209.9 125 77.6
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 3.1e-40 170.6 285 35.8
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 7.8e-36 156.0 145 57.9
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.7e-35 154.8 420 30.0
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 6.4e-30 136.3 80 73.8
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 3.2e-29 134.0 83 72.3
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.3e-27 128.6 219 36.1
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 4.3e-26 123.6 84 67.9
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.9e-22 110.9 134 52.2
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 5.1e-19 100.1 96 55.2
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.8e-17 94.4 177 39.5
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 6.2e-17 93.2 64 67.2
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 3.1e-16 90.9 64 65.6
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.9e-14 84.3 57 73.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 7.4e-10 69.7 46 65.2
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-07 62.0 95 38.9
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 2.0e-07 61.6 178 28.1
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 1.3e-06 58.9 124 33.9
Zm00001eb331980 Zea mays HOM05D000433 ORTHO05D000443 6.5e-06 56.6 123 33.3
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 8.4e-06 56.2 123 33.3


User provided reference genes

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