Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 0.0e+00 1281.2 668 100.0
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 5.2e-189 665.2 678 57.1
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 7.5e-188 661.4 674 56.1
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.5e-183 645.2 678 56.5
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 1.1e-178 630.9 666 54.7
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.4e-178 630.6 643 56.9
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 2.3e-173 613.2 633 56.2
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 3.1e-170 602.8 769 48.9
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.7e-168 597.0 632 55.1
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.0e-168 595.5 647 55.3
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 5.8e-164 582.0 653 52.5
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 9.2e-162 574.7 759 46.8
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.0e-161 573.5 639 52.7
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 2.7e-161 573.2 816 44.9
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 6.0e-161 572.0 670 51.0
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 3.0e-160 569.7 750 47.2
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 3.3e-159 566.2 749 47.3
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 9.8e-156 554.7 753 47.8
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 2.2e-155 553.5 708 50.0
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 2.5e-151 540.0 628 50.5
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.1e-149 534.6 738 45.3
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 3.1e-149 533.1 746 45.6
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 3.4e-148 529.6 678 49.0
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 2.2e-147 526.9 726 46.6
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 6.4e-147 525.4 748 44.8
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 5.1e-144 515.8 744 45.4
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.3e-143 513.1 710 46.3
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 9.5e-143 511.5 747 44.7
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.6e-142 509.6 747 44.7
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 1.4e-141 507.7 687 46.9
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.5e-140 504.2 666 50.0
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 7.6e-140 501.9 676 45.0
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 9.9e-140 501.5 751 44.1
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 7.1e-138 495.4 709 45.4
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 9.2e-138 495.0 710 45.6
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.1e-137 493.8 735 45.6
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.0e-136 491.5 488 58.6
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 8.7e-136 488.4 703 46.8
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.5e-135 486.9 727 45.9
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 1.6e-134 484.2 703 46.4
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 6.2e-134 482.3 705 46.1
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 9.0e-133 478.4 747 42.0
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 9.9e-132 474.9 720 45.7
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 1.3e-131 474.6 691 43.7
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 1.7e-131 474.2 702 43.6
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 7.1e-130 468.8 696 46.3
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 7.3e-127 458.8 489 55.6
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 2.1e-126 457.2 714 44.0
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.8e-126 456.8 749 42.2
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 8.1e-126 455.3 787 40.0
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 5.3e-125 452.6 358 66.5
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 9.0e-125 451.8 735 41.4
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 3.4e-124 449.9 709 45.0
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 3.4e-124 449.9 627 45.9
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 9.9e-124 448.4 713 43.1
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 2.2e-123 447.2 632 45.9
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.9e-123 446.8 689 43.5
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 3.8e-123 446.4 670 44.3
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 3.8e-123 446.4 641 43.5
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 6.4e-123 445.7 727 41.5
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 8.4e-123 445.3 660 45.5
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.1e-122 444.9 799 39.9
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 1.4e-122 444.5 353 64.0
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.9e-122 444.1 756 40.5
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 7.1e-122 442.2 783 40.1
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 2.3e-120 437.2 779 39.4
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 3.0e-120 436.8 687 43.8
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 3.9e-120 436.4 635 43.6
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 6.7e-120 435.6 698 43.7
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.5e-119 433.7 707 40.9
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 5.6e-119 432.6 713 41.1
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 7.4e-119 432.2 460 54.3
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 1.4e-117 427.9 630 41.7
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 4.0e-117 426.4 693 41.6
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 5.3e-117 426.0 447 55.3
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.2e-116 424.9 704 43.2
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.9e-115 419.5 364 59.6
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 4.9e-115 419.5 824 39.3
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 1.9e-114 417.5 703 40.5
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 4.2e-114 416.4 678 43.2
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 1.0e-112 411.8 371 58.8
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 1.3e-112 411.4 441 55.3
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 1.8e-112 411.0 355 61.7
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.8e-112 411.0 545 47.7
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 3.0e-112 410.2 371 58.5
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 3.0e-112 410.2 371 58.5
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 4.3e-111 406.4 356 60.4
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.3e-110 404.8 368 58.7
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 4.8e-110 402.9 360 59.2
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.8e-109 401.0 346 63.0
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 1.1e-106 391.7 698 40.5
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.1e-106 391.7 393 55.2
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.4e-106 391.3 393 55.2
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 2.5e-106 390.6 707 40.2
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 4.2e-106 389.8 311 65.0
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 7.1e-106 389.0 703 40.5
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 9.3e-106 388.7 307 66.8
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.6e-105 387.9 703 40.1
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 6.1e-105 386.0 360 58.3
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 1.8e-104 384.4 361 57.3
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.3e-104 384.0 698 40.4
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 6.7e-104 382.5 698 39.1
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.6e-102 377.9 317 61.5
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 1.0e-99 368.6 379 53.6
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.9e-99 367.1 669 39.0
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 3.9e-96 356.7 549 41.7
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 5.7e-95 352.8 669 38.4
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 3.6e-81 307.0 240 67.9
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 3.0e-80 303.9 615 37.2
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.1e-74 285.4 205 72.2
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.1e-66 258.8 195 66.7
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 1.5e-66 258.5 290 47.9
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.4e-64 251.9 511 37.4
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 9.8e-63 245.7 335 39.1
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 9.8e-63 245.7 235 52.8
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 2.7e-60 237.7 300 47.7
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 6.8e-56 223.0 323 44.0
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 7.3e-42 176.4 194 51.5
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.4e-39 167.5 123 74.0
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 1.1e-37 162.5 162 55.6
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.6e-36 157.1 113 68.1
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 2.5e-34 151.4 141 56.7
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 1.2e-31 142.5 152 54.6
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 6.2e-25 120.2 128 46.9
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 2.4e-24 118.2 86 68.6
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 4.0e-24 117.5 321 26.2
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 3.4e-23 114.4 106 57.5
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 6.0e-20 103.6 83 67.5
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 2.4e-16 91.7 294 29.6
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.5e-15 89.0 62 69.4
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 4.4e-15 87.4 174 28.7
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 2.2e-14 85.1 56 76.8
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 2.2e-14 85.1 56 76.8
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.1e-13 82.8 56 71.4
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 3.8e-06 57.8 66 47.0


User provided reference genes

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