Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024984001 Vitis vinifera HOM05D007849 ORTHO05D009964 4.9e-174 614.4 312 100.0
Dinv16985 Davidia involucrata HOM05D007849 ORTHO05D009964 4.2e-101 372.1 319 62.1
Dinv01583 Davidia involucrata HOM05D007849 ORTHO05D009964 2.3e-99 366.3 313 62.0
Dinv43166 Davidia involucrata HOM05D007849 ORTHO05D009964 1.2e-98 364.0 313 61.7
Dinv42934 Davidia involucrata HOM05D007849 ORTHO05D009964 5.7e-98 361.7 307 62.9
QL01p032362 Quercus lobata HOM05D007849 ORTHO05D009964 2.2e-97 359.8 312 61.9
TWI79G0095 Tripterygium wilfordii HOM05D007849 ORTHO05D009964 3.1e-96 355.9 301 59.5
Potri.009G029800 Populus trichocarpa HOM05D007849 ORTHO05D009964 5.3e-96 355.1 308 59.7
Haze_24080 Corylus avellana HOM05D007849 ORTHO05D009964 4.5e-95 352.1 344 55.2
Manes.04G034000 Manihot esculenta HOM05D007849 ORTHO05D009964 4.5e-95 352.1 299 61.5
Sabra09G0020700 Salix brachista HOM05D007849 ORTHO05D009964 8.5e-94 347.8 304 59.5
Atru.chr2.2286 Acer truncatum HOM05D007849 ORTHO05D009964 1.1e-93 347.4 301 59.8
Atru.chr3.3864 Acer truncatum HOM05D007849 ORTHO05D009964 1.1e-93 347.4 301 59.8
Nn2g10385 Nelumbo nucifera HOM05D007849 ORTHO05D009964 4.2e-93 345.5 324 56.8
Actinidia37211 Actinidia chinensis HOM05D007849 ORTHO05D009964 4.4e-90 335.5 316 57.3
RcHm_v2.0_Chr5g0064071 Rosa chinensis HOM05D007849 ORTHO05D009964 9.8e-90 334.3 304 58.2
Cfa011488 Carpinus fangiana HOM05D007849 ORTHO05D009964 7.0e-88 328.2 250 64.0
Gohir.D03G126500 Gossypium hirsutum HOM05D007849 ORTHO05D009964 1.6e-87 327.0 287 58.2
Thecc.09G323300 Theobroma cacao HOM05D007849 ORTHO05D009964 2.0e-87 326.6 301 56.8
MD03G1096200 Malus domestica HOM05D007849 ORTHO05D009964 4.5e-87 325.5 312 55.4
Duzib168G1667 Durio zibethinus HOM05D007849 ORTHO05D009964 7.7e-87 324.7 284 59.5
vmacro03084 Vaccinium macrocarpon HOM05D007849 ORTHO05D009964 1.0e-86 324.3 324 52.8
Eucgr.B02377 Eucalyptus grandis HOM05D007849 ORTHO05D009964 7.2e-85 318.2 306 54.6
Gorai.003G133000 Gossypium raimondii HOM05D007849 ORTHO05D009964 3.6e-84 315.8 302 55.3
Gohir.A03G041600 Gossypium hirsutum HOM05D007849 ORTHO05D009964 8.0e-84 314.7 287 55.7
Hma1.2p1_1888F.1_g306580 Hydrangea macrophylla HOM05D007849 ORTHO05D009964 1.8e-83 313.5 248 62.1
Migut.N02673 Erythranthe guttata HOM05D007849 ORTHO05D009964 6.8e-83 311.6 286 54.2
Oeu019202.2 Olea europaea HOM05D007849 ORTHO05D009964 2.0e-82 310.1 302 53.3
FAN11G2231 Fragaria x ananassa HOM05D007849 ORTHO05D009964 5.4e-80 302.0 308 52.9
PSO339G6571 Papaver somniferum HOM05D007849 ORTHO05D009964 1.3e-78 297.4 305 52.8
PGR102G2625 Punica granatum HOM05D007849 ORTHO05D009964 9.5e-77 291.2 289 50.5
Ciclev10029013m.g Citrus clementina HOM05D007849 ORTHO05D009964 1.0e-75 287.7 271 55.4
CsaV3_6G016950 Cucumis sativus L. HOM05D007849 ORTHO05D009964 1.8e-75 287.0 303 49.8
ATR0559G278 Amborella trichopoda HOM05D007849 ORTHO05D009964 9.8e-74 281.2 305 49.8
Lsat_1_v5_gn_4_92200 Lactuca sativa HOM05D007849 ORTHO05D009964 9.8e-74 281.2 287 51.2
Hund18918 Selenicereus undatus HOM05D007849 ORTHO05D009964 2.9e-73 279.6 304 48.7
ClCG02G020250 Citrullus lanatus HOM05D007849 ORTHO05D009964 8.6e-70 268.1 323 46.7
Aqoxy6G02063 Aquilegia oxysepala HOM05D007849 ORTHO05D009964 1.5e-69 267.3 263 54.0
AUR62009591 Chenopodium quinoa HOM05D007849 ORTHO05D009964 2.5e-69 266.5 318 47.2
MBI14_g31252_MAGBIO Magnolia biondii HOM05D007849 ORTHO05D009964 3.3e-69 266.2 299 51.8
Cpa.g.sc81.165 Carica papaya HOM05D007849 ORTHO05D009964 2.1e-68 263.5 301 49.8
TAR636G2131 Trochodendron aralioides HOM05D007849 ORTHO05D009964 1.4e-67 260.8 206 63.6
COL.COLO4_18494 Corchorus olitorius HOM05D007849 ORTHO05D009964 1.8e-67 260.4 223 58.3
FvH4_3g35813 Fragaria vesca HOM05D007849 ORTHO05D009964 4.0e-67 259.2 318 47.8
Sed0012750 Sechium edule HOM05D007849 ORTHO05D009964 5.2e-67 258.8 328 44.5
ECA236G2501 Erigeron canadensis HOM05D007849 ORTHO05D009964 8.9e-67 258.1 245 54.3
DCAR_018903 Daucus carota HOM05D007849 ORTHO05D009964 1.2e-66 257.7 316 45.6
SalBow2G0065 Salvia bowleyana HOM05D007849 ORTHO05D009964 1.7e-65 253.8 283 46.6
Os03g0275400 Oryza sativa ssp. japonica HOM05D007849 ORTHO05D009964 4.6e-63 245.7 262 49.6
Zm00001eb012380 Zea mays HOM05D007849 ORTHO05D009964 2.5e-61 240.0 256 50.0
SEGI_09096 Sequoiadendron giganteum HOM05D007849 ORTHO05D009964 1.5e-58 230.7 311 38.6
Lj2C1060G4 Lonicera japonica HOM05D007849 ORTHO05D009964 4.4e-58 229.2 190 63.2
Rhsim13G0083900 Rhododendron simsii HOM05D007849 ORTHO05D009964 4.4e-58 229.2 244 52.0
unitig_0.g229 Utricularia gibba HOM05D007849 ORTHO05D009964 9.8e-58 228.0 243 48.1
AUR62001805 Chenopodium quinoa HOM05D007849 ORTHO05D009964 8.3e-57 224.9 258 47.7
HPP92_021135 Vanilla planifolia HOM05D007849 ORTHO05D009964 4.7e-52 209.1 291 41.9
FAN21G0522 Fragaria x ananassa HOM05D007849 ORTHO05D009964 3.4e-50 203.0 195 52.3
SGA_v2.0_scaffold104G30123 Striga asiatica HOM05D007849 ORTHO05D009964 9.2e-48 194.9 291 41.2
HanXRQChr05g0134521 Helianthus annuus HOM05D007849 ORTHO05D009964 7.8e-47 191.8 155 57.4
MSTRG.12647 Avicennia marina HOM05D007849 ORTHO05D009964 2.5e-45 186.8 129 64.3
Prupe.6G079200 Prunus persica HOM05D007849 ORTHO05D009964 4.0e-43 179.5 191 48.7
Zm00001eb397660 Zea mays HOM05D007849 ORTHO05D009964 7.6e-42 175.3 145 58.6
EL10Ac7g16001 Beta vulgaris HOM05D007849 ORTHO05D009964 1.6e-39 167.5 236 44.5
MELO3C025926.2 Cucumis melo HOM05D007849 ORTHO05D009964 4.8e-36 156.0 187 49.2
Sc21g0005700 Simmondsia chinensis HOM05D007849 ORTHO05D009964 6.4e-33 145.6 116 57.8
CSS0031317 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.8e-30 137.5 121 59.5
CSS0003796 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 3.9e-30 136.3 117 60.7
CSS0013987 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 3.9e-30 136.3 121 58.7
CSS0045886 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.1e-29 134.8 122 57.4
CSS0045873 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 2.5e-29 133.7 122 57.4
CSS0023116 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.3e-28 131.3 122 56.6
CSS0041914 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 6.9e-27 125.6 127 54.3
Ah.08g219350 Amaranthus hybridus HOM05D007849 ORTHO05D009964 3.8e-25 119.8 199 39.2
Pp3c18_13380 Physcomitrium patens HOM05D007849 ORTHO05D009964 1.8e-22 110.9 327 26.0
CBR_g22259 Chara braunii HOM05D007849 ORTHO05D009964 3.9e-22 109.8 181 32.6
Mapoly0108s0012 Marchantia polymorpha HOM05D007849 ORTHO05D009964 3.3e-21 106.7 321 26.8
PSO384G3258 Papaver somniferum HOM05D007849 ORTHO05D009964 7.4e-21 105.5 136 45.6
Sed0025903 Sechium edule HOM05D007849 ORTHO05D009964 3.7e-20 103.2 112 45.5
CSS0042684 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.3e-17 94.7 110 48.2
CSS0041545 Camellia sinensis var. sinensis HOM05D007849 ORTHO05D009964 1.7e-17 94.4 110 47.3
Sed0018048 Sechium edule HOM05D000571 ORTHO05D000435 9.3e-08 62.0 111 32.4
MD00G1107600 Malus domestica HOM05D000571 ORTHO05D000435 1.2e-07 61.6 110 30.9
Sc13g0000770 Simmondsia chinensis HOM05D000571 ORTHO05D000435 2.1e-07 60.8 109 31.2
MELO3C026803.2 Cucumis melo HOM05D000571 ORTHO05D000435 2.7e-07 60.5 111 32.4
CsaV3_4G031730 Cucumis sativus L. HOM05D000571 ORTHO05D000435 2.7e-07 60.5 111 32.4
Lalb_Chr14g0365311 Lupinus albus HOM05D000571 ORTHO05D000435 3.6e-07 60.1 147 26.5
QL07p014616 Quercus lobata HOM05D000571 ORTHO05D000435 3.6e-07 60.1 110 29.1
Rhsim04G0118900 Rhododendron simsii HOM05D000571 ORTHO05D000435 3.6e-07 60.1 110 31.8
VMungo1383G1628 Vigna mungo HOM05D000571 ORTHO05D000435 3.6e-07 60.1 109 31.2
Cfa019924 Carpinus fangiana HOM05D000571 ORTHO05D000435 7.9e-07 58.9 150 26.7
DCAR_009095 Daucus carota HOM05D000571 ORTHO05D000435 7.9e-07 58.9 118 31.4
Potri.016G025200 Populus trichocarpa HOM05D000571 ORTHO05D000435 7.9e-07 58.9 111 30.6
TAR636G3126 Trochodendron aralioides HOM05D000571 ORTHO05D000435 7.9e-07 58.9 142 28.9
ClCG04G004920 Citrullus lanatus HOM05D000571 ORTHO05D000435 1.0e-06 58.5 106 32.1
ECA247G4100 Erigeron canadensis HOM05D000571 ORTHO05D000435 1.0e-06 58.5 110 30.0
Migut.J01564 Erythranthe guttata HOM05D000571 ORTHO05D000435 1.0e-06 58.5 148 27.7
Duzib128G1577 Durio zibethinus HOM05D000968 ORTHO05D003096 1.3e-06 58.2 204 29.4
Migut.K00172 Erythranthe guttata HOM05D000571 ORTHO05D000435 1.3e-06 58.2 148 28.4
FvH4_6g13410 Fragaria vesca HOM05D000968 ORTHO05D003096 1.3e-06 58.2 111 31.5
FAN14G5857 Fragaria x ananassa HOM05D000968 ORTHO05D003096 1.3e-06 58.2 111 31.5
Lalb_Chr24g0400661 Lupinus albus HOM05D000571 ORTHO05D000435 1.3e-06 58.2 147 25.2
PSO541G5344 Papaver somniferum HOM05D000571 ORTHO05D000435 1.3e-06 58.2 109 30.3
PSO675G2405 Papaver somniferum HOM05D000571 ORTHO05D000435 1.3e-06 58.2 109 30.3
Potri.006G027500 Populus trichocarpa HOM05D000571 ORTHO05D000435 1.3e-06 58.2 111 29.7
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 1.3e-06 58.2 49 49.0
ECA232G3929 Erigeron canadensis HOM05D000968 ORTHO05D003096 1.8e-06 57.8 118 32.2
PSO339G5156 Papaver somniferum HOM05D000571 ORTHO05D000435 1.8e-06 57.8 112 30.4
PSO384G0817 Papaver somniferum HOM05D000571 ORTHO05D000435 1.8e-06 57.8 112 30.4
Aqoxy5G01885 Aquilegia oxysepala HOM05D002026 ORTHO05D002291 2.3e-06 57.4 210 25.7
RcHm_v2.0_Chr3g0493221 Rosa chinensis HOM05D000571 ORTHO05D000435 2.3e-06 57.4 111 29.7
Carub.0007s1643 Capsella rubella HOM05D000571 ORTHO05D000435 3.0e-06 57.0 116 25.9
Ca_08345_v3 Cicer arietinum L. HOM05D000571 ORTHO05D000435 3.0e-06 57.0 110 29.1
Haze_20310 Corylus avellana HOM05D000571 ORTHO05D000435 3.0e-06 57.0 108 29.6
FAN23G1038 Fragaria x ananassa HOM05D000571 ORTHO05D000435 3.0e-06 57.0 111 30.6
Phvul.001G108600 Phaseolus vulgaris HOM05D000571 ORTHO05D000435 3.0e-06 57.0 112 30.4
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 3.0e-06 57.0 109 30.3
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 3.0e-06 57.0 44 47.7
Actinidia38206 Actinidia chinensis HOM05D000571 ORTHO05D000435 3.9e-06 56.6 110 30.9
arahy.Tifrunner.gnm1.ann1.1LU1XJ Arachis hypogaea HOM05D000571 ORTHO05D000435 3.9e-06 56.6 110 29.1
arahy.Tifrunner.gnm1.ann1.YX7U7K Arachis hypogaea HOM05D000571 ORTHO05D000435 3.9e-06 56.6 110 29.1
Haze_26157 Corylus avellana HOM05D000571 ORTHO05D004763 3.9e-06 56.6 123 31.7
FAN26G1342 Fragaria x ananassa HOM05D000571 ORTHO05D000435 3.9e-06 56.6 111 29.7
Manes.08G066800 Manihot esculenta HOM05D000571 ORTHO05D000435 3.9e-06 56.6 114 30.7
Os05g0458000 Oryza sativa ssp. japonica HOM05D000968 ORTHO05D003096 3.9e-06 56.6 117 28.2
BolC8t50835H Brassica oleracea HOM05D000571 ORTHO05D000435 5.1e-06 56.2 154 26.6
FvH4_1g28800 Fragaria vesca HOM05D000571 ORTHO05D000435 5.1e-06 56.2 111 29.7
FAN19G1127 Fragaria x ananassa HOM05D000571 ORTHO05D000435 5.1e-06 56.2 111 29.7
Gorai.003G087200 Gossypium raimondii HOM05D000571 ORTHO05D000435 5.1e-06 56.2 121 28.1
Prupe.7G022600 Prunus persica HOM05D000571 ORTHO05D000435 5.1e-06 56.2 110 30.0
TPR.G23198 Trifolium pratense HOM05D000571 ORTHO05D000435 5.1e-06 56.2 110 28.2
HPP92_003861 Vanilla planifolia HOM05D002026 ORTHO05D002291 5.1e-06 56.2 145 28.3
Actinidia00884 Actinidia chinensis HOM05D000571 ORTHO05D000435 6.7e-06 55.8 110 30.9
Ciclev10013374m.g Citrus clementina HOM05D000571 ORTHO05D000435 6.7e-06 55.8 114 28.9
Dinv37156 Davidia involucrata HOM05D000968 ORTHO05D003096 6.7e-06 55.8 215 26.5
MD14G1100600 Malus domestica HOM05D000571 ORTHO05D000435 6.7e-06 55.8 111 29.7
Nn7g37151 Nelumbo nucifera HOM05D000571 ORTHO05D000435 6.7e-06 55.8 112 28.6
RcHm_v2.0_Chr3g0494561 Rosa chinensis HOM05D000571 ORTHO05D000435 6.7e-06 55.8 112 26.8
Carub.0005s2367 Capsella rubella HOM05D000571 ORTHO05D000435 8.7e-06 55.5 114 31.6
Ciclev10011689m.g Citrus clementina HOM05D000571 ORTHO05D000435 8.7e-06 55.5 112 31.2
Medtr7g088360 Medicago truncatula HOM05D000571 ORTHO05D000435 8.7e-06 55.5 114 28.9
PGR142G3682 Punica granatum HOM05D000571 ORTHO05D000435 8.7e-06 55.5 119 30.3
Sabra06G0020400 Salix brachista HOM05D000268 ORTHO05D000261 8.7e-06 55.5 111 29.7


User provided reference genes

Program Settings