Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 0.0e+00 1105.9 560 100.0
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 2.0e-258 895.6 562 78.8
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 3.3e-253 878.2 567 79.0
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 2.3e-251 872.1 560 77.0
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 2.0e-250 869.0 572 77.3
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 2.7e-247 858.6 565 75.6
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 7.8e-247 857.1 532 81.2
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 4.7e-244 847.8 544 76.7
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 3.4e-242 841.6 559 75.8
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.8e-242 840.9 520 76.9
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 5.8e-242 840.9 563 76.0
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 1.3e-241 839.7 561 73.4
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 1.7e-241 839.3 560 76.6
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 2.2e-241 839.0 564 75.4
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 6.4e-241 837.4 551 74.8
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 8.3e-241 837.0 566 76.1
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 7.0e-240 833.9 568 73.9
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 7.8e-239 830.5 546 77.1
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.7e-238 829.3 545 75.8
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 2.3e-238 828.9 548 73.5
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 2.3e-238 828.9 565 75.4
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 2.3e-238 828.9 545 75.2
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.9e-237 825.9 562 73.3
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 3.3e-237 825.1 547 74.0
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 1.2e-236 823.2 560 72.9
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 2.1e-236 822.4 545 76.0
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 2.3e-235 818.9 630 67.9
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 2.3e-235 818.9 630 67.9
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 3.1e-235 818.5 557 74.5
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 6.8e-235 817.4 561 73.4
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 1.2e-234 816.6 548 74.1
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 4.4e-234 814.7 574 72.0
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 9.8e-234 813.5 560 73.0
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 2.2e-233 812.4 533 76.5
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 2.9e-233 812.0 521 76.6
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.1e-232 810.1 562 72.8
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 2.4e-232 808.9 574 68.5
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 1.6e-231 806.2 561 74.9
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.6e-231 804.7 583 69.5
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 7.8e-231 803.9 557 71.1
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 1.0e-230 803.5 559 73.2
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 2.3e-230 802.4 554 72.6
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 3.9e-230 801.6 551 71.9
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 6.6e-230 800.8 542 69.7
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 6.6e-230 800.8 555 71.4
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 1.9e-229 799.3 545 72.8
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 4.7e-228 794.7 559 70.8
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 1.4e-227 793.1 560 71.1
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 2.3e-227 792.3 565 72.6
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 3.1e-227 792.0 565 70.6
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 5.2e-227 791.2 556 73.6
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 2.0e-226 789.3 532 73.5
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 1.7e-225 786.2 568 69.0
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 2.9e-225 785.4 529 70.9
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 3.8e-225 785.0 563 71.0
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 8.4e-225 783.9 568 69.9
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 1.1e-224 783.5 544 69.7
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 2.8e-220 768.8 560 68.2
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 3.6e-220 768.5 519 71.9
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 2.4e-219 765.8 556 68.0
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 4.0e-219 765.0 658 62.6
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 6.9e-219 764.2 559 67.6
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 2.6e-218 762.3 549 71.4
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 1.2e-215 753.4 484 72.3
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 1.2e-215 753.4 436 78.9
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 1.3e-214 750.0 465 77.4
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 5.1e-214 748.0 436 78.0
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 3.6e-212 741.9 503 67.0
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 1.8e-211 739.6 557 64.5
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 3.1e-211 738.8 445 76.0
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 9.0e-211 737.3 587 65.4
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 1.5e-210 736.5 573 67.5
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 5.8e-210 734.6 496 75.6
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 8.4e-209 730.7 563 65.9
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.9e-208 729.6 551 66.1
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 4.6e-207 724.9 557 66.4
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 4.6e-207 724.9 565 67.6
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 1.9e-205 719.5 484 69.0
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 4.0e-203 711.8 492 67.7
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 4.0e-203 711.8 446 71.7
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 2.6e-202 709.1 508 66.9
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 2.2e-201 706.1 561 63.6
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 7.9e-199 697.6 488 68.6
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 7.9e-199 697.6 558 64.9
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 7.9e-199 697.6 558 64.9
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 1.5e-197 693.3 488 68.2
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 1.5e-194 683.3 557 63.4
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 2.0e-194 682.9 553 64.9
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 5.8e-194 681.4 493 66.9
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 1.9e-192 676.4 488 66.6
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 7.1e-192 674.5 564 63.7
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 7.9e-191 671.0 568 59.7
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 4.8e-188 661.8 544 63.1
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 1.2e-178 630.6 561 60.4
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 2.1e-175 619.8 444 63.1
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 2.6e-170 602.8 489 55.2
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 3.4e-170 602.4 441 62.8
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 7.7e-170 601.3 374 76.7
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.7e-164 583.6 488 56.4
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 2.5e-160 569.7 436 58.0
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 8.5e-153 544.7 539 54.5
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.1e-147 527.7 494 56.3
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.7e-111 406.0 268 75.0
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 2.8e-79 300.4 162 83.3
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 1.1e-62 245.4 298 48.0
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 5.0e-60 236.5 458 32.8
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 2.8e-55 220.7 141 66.7
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 7.4e-48 196.1 126 74.6
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.8e-44 183.7 105 76.2
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.0e-41 175.6 255 43.9
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 1.5e-40 171.8 131 67.9
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 9.1e-38 162.5 94 76.6
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 3.1e-30 137.5 181 45.3
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 5.9e-29 133.3 199 40.7
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 3.8e-28 130.6 199 40.2
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.1e-26 124.8 75 74.7
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.7e-24 116.7 61 85.2
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.3e-17 94.7 332 25.0
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 5.2e-17 93.6 192 36.5
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 5.8e-16 90.1 334 24.6
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 8.3e-15 86.3 335 24.2
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 2.0e-13 81.6 332 23.8
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.7e-13 81.3 332 21.4
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 2.7e-13 81.3 223 26.9
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 6.0e-13 80.1 319 22.9
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 7.8e-13 79.7 309 24.9
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.0e-12 79.3 70 60.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 3.9e-12 77.4 259 26.3
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 8.6e-12 76.3 338 22.8
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 8.6e-12 76.3 319 24.1
Cfa025051 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.1e-11 75.9 319 22.9
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.9e-11 75.1 211 26.1
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.2e-10 72.4 335 22.7
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.3e-09 68.2 338 22.2
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.3e-09 68.2 254 26.0
Hma1.2p1_0003F.1_g003610 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 1.2e-08 65.9 73 45.2
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 2.0e-08 65.1 229 26.2
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.4e-08 64.3 224 24.1
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 7.5e-08 63.2 53 54.7
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 3.7e-07 60.8 48 52.1
AUR62026981 Chenopodium quinoa HOM05D000096 ORTHO05D000045 8.3e-07 59.7 40 70.0
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 8.3e-07 59.7 233 24.9
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 7.0e-06 56.6 90 30.0
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 9.2e-06 56.2 90 30.0


User provided reference genes

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