Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 9.1e-90 333.6 171 100.0
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 4.0e-77 291.6 164 87.2
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 5.2e-77 291.2 171 86.5
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.4e-74 283.1 173 82.7
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.4e-74 283.1 173 82.7
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 2.7e-73 278.9 171 81.9
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 5.9e-73 277.7 168 82.7
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 1.7e-72 276.2 171 81.3
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 7.3e-71 270.8 170 79.4
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 3.6e-70 268.5 169 81.1
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.8e-69 266.2 165 78.8
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 2.3e-69 265.8 171 76.6
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 3.1e-69 265.4 169 76.3
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 3.1e-69 265.4 171 78.9
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 3.1e-69 265.4 171 79.5
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 4.0e-69 265.0 165 78.2
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 4.0e-69 265.0 165 78.2
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 4.0e-69 265.0 165 78.2
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 4.0e-69 265.0 171 76.6
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 5.2e-69 264.6 169 76.9
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 5.2e-69 264.6 169 80.5
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 6.8e-69 264.2 156 80.1
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 6.8e-69 264.2 156 80.1
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 6.8e-69 264.2 165 80.6
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 6.8e-69 264.2 170 78.8
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 6.8e-69 264.2 156 82.7
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 1.2e-68 263.5 169 76.3
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.5e-68 263.1 156 79.5
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.5e-68 263.1 156 79.5
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.5e-68 263.1 169 75.7
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 2.6e-68 262.3 171 78.4
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 4.4e-68 261.5 168 75.0
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 5.8e-68 261.2 156 78.8
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 7.5e-68 260.8 169 77.5
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 7.5e-68 260.8 171 79.5
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 9.8e-68 260.4 171 77.8
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 9.8e-68 260.4 171 77.8
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 9.8e-68 260.4 171 73.7
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 9.8e-68 260.4 166 75.9
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 1.3e-67 260.0 169 75.7
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 1.3e-67 260.0 166 75.9
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 2.9e-67 258.8 166 77.7
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 2.9e-67 258.8 153 82.4
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 3.7e-67 258.5 169 75.1
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 3.7e-67 258.5 169 75.1
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 3.7e-67 258.5 169 75.1
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 4.9e-67 258.1 171 76.6
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 6.4e-67 257.7 171 73.7
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 1.4e-66 256.5 172 77.9
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 1.9e-66 256.1 169 74.6
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.9e-66 256.1 174 74.1
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 1.9e-66 256.1 156 82.7
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.2e-65 253.4 171 76.0
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.6e-65 253.1 171 72.5
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 1.6e-65 253.1 169 72.8
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 2.7e-65 252.3 171 76.0
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 3.5e-65 251.9 170 74.7
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 4.6e-65 251.5 171 74.3
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 6.0e-65 251.1 171 73.7
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 6.0e-65 251.1 173 74.6
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 7.8e-65 250.8 168 72.6
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 7.8e-65 250.8 168 72.6
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 7.8e-65 250.8 159 76.7
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.0e-64 250.4 143 83.2
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 1.7e-64 249.6 173 72.8
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 1.7e-64 249.6 161 77.6
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 2.3e-64 249.2 171 74.9
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 2.3e-64 249.2 157 76.4
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 6.6e-64 247.7 167 76.0
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 8.6e-64 247.3 157 75.8
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 8.6e-64 247.3 169 72.8
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.1e-63 246.9 171 70.8
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 1.1e-63 246.9 177 74.6
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.1e-63 246.9 167 74.9
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.5e-63 246.5 167 75.4
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 1.5e-63 246.5 167 74.9
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 1.5e-63 246.5 167 74.9
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.9e-63 246.1 150 80.7
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 1.9e-63 246.1 171 74.3
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.9e-63 246.1 167 75.4
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 3.3e-63 245.4 152 80.9
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 4.3e-63 245.0 169 73.4
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 4.3e-63 245.0 166 74.7
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 7.3e-63 244.2 173 70.5
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 7.3e-63 244.2 171 72.5
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 2.1e-62 242.7 169 72.2
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 2.8e-62 242.3 171 72.5
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 2.8e-62 242.3 168 71.4
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 3.6e-62 241.9 171 71.9
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 1.1e-61 240.4 169 72.2
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.1e-61 240.4 168 70.8
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 1.4e-61 240.0 169 72.2
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.4e-61 240.0 169 74.0
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 1.8e-61 239.6 172 71.5
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 5.2e-61 238.0 220 58.6
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 6.8e-61 237.7 172 72.7
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 1.2e-60 236.9 149 76.5
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 2.0e-60 236.1 143 82.5
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.6e-60 235.7 156 76.9
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 3.4e-60 235.3 168 71.4
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 9.8e-60 233.8 178 72.5
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 8.3e-59 230.7 172 70.3
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 9.5e-55 217.2 141 80.1
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 9.5e-55 217.2 151 74.2
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 2.8e-54 215.7 146 75.3
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 1.8e-53 213.0 137 77.4
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 8.9e-53 210.7 118 87.3
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 5.8e-52 208.0 168 60.1
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 2.9e-51 205.7 145 73.8
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 9.2e-50 200.7 143 74.1
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 2.3e-48 196.1 141 70.9
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 3.0e-48 195.7 142 71.8
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 8.6e-48 194.1 132 74.2
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 1.1e-47 193.7 134 74.6
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 1.1e-47 193.7 134 74.6
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 2.5e-47 192.6 110 85.5
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 7.3e-47 191.0 160 58.1
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 1.6e-46 189.9 143 68.5
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 2.1e-46 189.5 128 72.7
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 2.1e-46 189.5 167 58.7
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 4.7e-46 188.3 140 72.9
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-45 187.2 126 74.6
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 1.2e-44 183.7 143 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 2.6e-44 182.6 158 59.5
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.2e-42 175.6 150 66.7
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 3.2e-42 175.6 150 66.7
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 2.1e-41 172.9 131 67.2
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 8.7e-40 167.5 121 68.6
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 3.6e-38 162.2 155 51.0
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 3.1e-37 159.1 162 58.0
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 2.6e-36 156.0 96 78.1
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 1.7e-35 153.3 96 76.0
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 1.1e-34 150.6 96 79.2
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 5.4e-34 148.3 81 88.9
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 6.0e-33 144.8 89 77.5
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 6.2e-30 134.8 114 64.0
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 2.0e-28 129.8 153 45.8
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 4.5e-28 128.6 161 43.5
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 2.1e-25 119.8 67 86.6
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 5.1e-24 115.2 146 41.8
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 6.7e-24 114.8 75 73.3
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 3.1e-21 105.9 140 40.0
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.5e-20 103.6 126 50.8
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 1.0e-16 90.9 73 64.4
Nn6g32762 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.0e-12 76.6 55 72.7
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 5.0e-11 72.0 89 49.4
TPR.G39290 Trifolium pratense HOM05D004936 ORTHO05D005977 6.5e-11 71.6 40 82.5
MD05G1160000 Malus domestica HOM05D004936 ORTHO05D005977 3.2e-10 69.3 45 71.1
SEGI_05638 Sequoiadendron giganteum HOM05D004024 ORTHO05D004639 6.7e-08 61.6 136 31.6
DCAR_027921 Daucus carota HOM05D004936 ORTHO05D005977 2.5e-07 59.7 32 71.9
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 4.3e-07 58.9 28 89.3
Cpa.g.sc2.380 Carica papaya HOM05D004936 ORTHO05D005977 4.3e-07 58.9 33 84.8
arahy.Tifrunner.gnm1.ann1.BM2UDG Arachis hypogaea HOM05D004936 ORTHO05D086586 9.7e-07 57.8 29 86.2
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 1.3e-06 57.4 66 45.5
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 1.3e-06 57.4 68 45.6
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 1.6e-06 57.0 167 28.7
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 2.2e-06 56.6 68 44.1
arahy.Tifrunner.gnm1.ann1.94PN3C Arachis hypogaea HOM05D004936 ORTHO05D005977 2.8e-06 56.2 28 85.7
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 2.8e-06 56.2 29 82.8
Medtr2g070300 Medicago truncatula HOM05D004936 ORTHO05D005977 2.8e-06 56.2 45 62.2
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 3.7e-06 55.8 66 43.9


User provided reference genes

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