Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 7.7e-121 437.2 226 100.0
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.0e-96 355.5 198 92.9
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 4.3e-95 351.7 198 92.9
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 2.1e-94 349.4 198 92.4
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 2.8e-94 349.0 198 92.4
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.7e-94 348.2 198 91.4
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 8.1e-94 347.4 198 91.9
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.1e-93 347.1 198 90.4
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.1e-93 347.1 198 90.4
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.4e-93 346.7 198 90.4
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.4e-93 346.7 198 90.4
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.8e-93 346.3 198 91.4
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.8e-93 346.3 198 90.4
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.3e-93 345.9 198 91.9
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 3.1e-93 345.5 198 91.4
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.0e-93 345.1 198 90.9
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 4.0e-93 345.1 198 90.4
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 5.2e-93 344.7 198 89.9
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 5.2e-93 344.7 197 90.9
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 6.8e-93 344.4 198 90.4
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 8.9e-93 344.0 198 90.9
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.2e-92 343.6 198 89.9
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.0e-92 342.8 198 89.4
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 2.0e-92 342.8 198 89.4
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 2.6e-92 342.4 198 89.4
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 2.6e-92 342.4 198 89.4
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.6e-92 342.4 198 89.4
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.6e-92 342.4 198 90.9
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.6e-92 342.4 198 88.9
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 3.4e-92 342.0 198 89.4
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 3.4e-92 342.0 198 89.4
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 3.4e-92 342.0 198 89.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 3.4e-92 342.0 198 88.4
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 4.4e-92 341.7 198 89.9
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 4.4e-92 341.7 198 89.9
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 4.4e-92 341.7 198 89.9
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 5.8e-92 341.3 198 88.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 5.8e-92 341.3 198 88.9
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 5.8e-92 341.3 198 89.4
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.6e-92 340.9 198 90.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 7.6e-92 340.9 198 88.9
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 9.9e-92 340.5 198 88.9
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 9.9e-92 340.5 198 88.9
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 9.9e-92 340.5 198 87.9
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 9.9e-92 340.5 198 88.4
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 9.9e-92 340.5 198 88.4
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 1.3e-91 340.1 198 89.4
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 1.3e-91 340.1 198 88.4
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.3e-91 340.1 198 88.9
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.7e-91 339.7 198 88.4
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 2.2e-91 339.3 198 88.4
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 2.2e-91 339.3 198 89.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 2.9e-91 339.0 198 88.9
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.9e-91 339.0 198 87.9
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.7e-91 338.6 198 88.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 4.9e-91 338.2 199 88.9
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 4.9e-91 338.2 199 88.9
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 4.9e-91 338.2 198 88.9
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 6.4e-91 337.8 198 87.9
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 6.4e-91 337.8 199 88.9
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 6.4e-91 337.8 199 88.9
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 6.4e-91 337.8 198 88.4
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 8.3e-91 337.4 198 89.4
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 8.3e-91 337.4 198 87.9
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.1e-90 337.0 198 88.4
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.4e-90 336.7 197 87.8
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.4e-90 336.7 198 88.4
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.9e-90 336.3 198 87.4
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.9e-90 336.3 198 87.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.4e-90 335.9 198 87.4
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 2.4e-90 335.9 198 87.9
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 2.4e-90 335.9 198 87.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 2.4e-90 335.9 198 86.9
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.4e-90 335.9 198 87.9
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 4.1e-90 335.1 198 86.4
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 5.4e-90 334.7 207 85.5
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 5.4e-90 334.7 198 87.4
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 5.4e-90 334.7 198 86.9
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.4e-90 334.7 198 87.4
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.4e-90 334.7 198 87.4
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 7.1e-90 334.3 198 86.9
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 9.2e-90 334.0 198 86.9
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.6e-89 333.2 198 86.9
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.1e-89 332.8 198 87.4
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 2.7e-89 332.4 198 86.4
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 3.5e-89 332.0 198 86.4
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 3.5e-89 332.0 198 85.9
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 4.6e-89 331.6 198 85.9
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 4.6e-89 331.6 198 87.4
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 4.6e-89 331.6 198 86.4
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 7.8e-89 330.9 198 86.4
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 7.8e-89 330.9 198 86.9
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 7.8e-89 330.9 198 86.4
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.0e-88 330.5 198 87.9
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.3e-88 330.1 198 85.4
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.3e-88 330.1 198 86.9
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.7e-88 329.7 195 88.2
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.7e-88 329.7 198 85.4
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.7e-88 329.7 198 87.9
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 2.3e-88 329.3 198 85.4
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 3.9e-88 328.6 198 84.8
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 8.6e-88 327.4 198 84.3
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 8.6e-88 327.4 198 86.4
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 2.5e-87 325.9 198 85.4
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 4.3e-87 325.1 200 83.0
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 9.6e-87 323.9 221 78.3
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 1.2e-86 323.6 231 76.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.6e-86 323.2 198 83.8
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-86 321.6 221 77.8
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-86 321.6 221 77.8
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-86 321.6 221 77.8
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-86 321.6 221 77.8
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.8e-85 319.7 198 83.8
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 5.2e-85 318.2 200 82.5
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.2e-84 317.0 208 81.7
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 7.6e-84 314.3 179 91.6
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 7.1e-82 307.8 198 79.8
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 9.3e-82 307.4 199 81.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.0e-80 303.9 200 80.5
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.0e-80 303.9 200 80.5
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 3.1e-77 292.4 225 69.8
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 6.4e-75 284.6 201 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.9e-74 283.1 190 76.3
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 3.2e-74 282.3 198 77.3
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 3.2e-74 282.3 178 83.1
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.2e-74 282.0 198 77.8
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 6.6e-72 274.6 238 64.3
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.6e-70 270.0 198 71.2
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 5.8e-68 261.5 193 68.4
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 2.2e-67 259.6 148 91.2
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 6.4e-67 258.1 149 89.9
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 2.5e-63 246.1 204 63.7
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.6e-54 216.9 201 59.2
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 4.6e-49 198.7 198 62.1
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.3e-48 197.2 131 81.7
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 7.4e-47 191.4 138 75.4
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 5.3e-45 185.3 143 71.3
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.4e-34 150.6 148 60.1
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.6e-31 139.8 170 52.4
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.7e-30 137.1 80 86.2
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.6e-28 130.6 188 40.4
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 8.8e-24 114.8 206 38.8
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.5e-23 114.0 187 37.4
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.7e-23 112.1 62 90.3
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.5e-20 102.4 69 76.8
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.0e-19 101.3 75 73.3
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 4.4e-15 85.9 47 91.5
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 3.7e-14 82.8 62 75.8
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 2.4e-13 80.1 85 54.1
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 3.5e-12 76.3 64 67.2
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 5.0e-11 72.4 43 86.0


User provided reference genes

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