Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1917.1 1008 100.0
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1536.5 1010 79.1
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1513.4 1018 77.6
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1511.1 1016 77.3
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1509.2 1019 77.6
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1496.5 1013 77.6
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1495.3 1013 76.5
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1491.9 1026 76.4
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1488.0 1014 77.6
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1487.6 1013 77.3
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1487.2 1045 75.8
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1484.9 1014 76.7
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1483.8 1021 76.4
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1482.6 1021 77.9
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1481.1 1017 76.0
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1481.1 1012 78.3
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1479.5 1018 76.4
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1477.6 1015 76.4
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1471.1 1010 76.6
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1465.7 1024 75.8
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1465.7 1022 76.1
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1464.9 1011 75.1
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1464.5 1011 75.1
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1461.8 1018 76.0
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1459.5 1011 75.2
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1452.6 1026 75.4
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1450.3 1019 74.9
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1447.6 1020 75.3
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1446.4 995 76.9
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1444.9 1019 75.0
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1443.7 1012 74.7
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1442.9 1009 75.6
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1442.2 1016 75.8
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1439.5 1020 74.7
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1438.3 1026 74.8
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1436.8 1004 75.0
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1434.9 1017 74.4
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1433.3 1028 74.2
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1431.8 1012 74.9
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1425.6 1009 74.0
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1417.9 1009 74.0
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1416.4 1010 73.2
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1413.3 1013 73.6
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1412.1 1018 73.7
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1412.1 1055 71.7
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1411.4 1050 72.1
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1411.0 1024 73.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1401.0 1029 72.7
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1398.3 1008 73.6
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1397.5 1022 73.8
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1396.3 1019 72.2
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1394.0 1011 72.2
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1390.2 1012 72.1
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1389.8 977 73.4
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1385.9 962 74.8
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1378.6 1009 71.6
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1375.9 1019 70.8
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1372.5 1014 71.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1369.0 1010 72.5
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1367.4 1011 71.9
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1365.5 1037 69.1
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1364.7 1022 71.5
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1361.3 1018 71.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1358.6 1077 67.9
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1354.7 1018 69.8
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1350.1 1013 71.5
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1348.2 1019 69.5
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1346.3 1019 69.4
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1345.9 1018 69.2
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1345.9 1019 69.1
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1345.1 1019 69.2
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1343.2 1018 68.6
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1342.8 1018 69.0
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1342.8 1015 71.0
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1341.6 1019 69.0
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1340.1 937 74.8
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1339.7 1020 70.4
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1339.3 1015 70.8
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1335.5 1015 68.6
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1335.5 1033 69.6
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1335.1 1026 70.3
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1334.3 1015 68.5
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1334.3 1015 68.7
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1330.5 1033 69.5
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1318.1 1038 69.6
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1315.8 967 70.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1314.3 1009 69.4
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1307.7 1062 65.6
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1306.2 1002 67.7
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1305.8 942 71.7
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1302.7 1038 67.3
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 1015 69.4
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1291.9 1011 67.4
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1289.2 914 74.4
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1287.7 1049 65.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1278.8 944 69.8
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1276.9 1010 68.2
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1272.7 991 67.1
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1031 66.0
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1244.6 794 81.5
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1235.3 850 74.0
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1216.4 1073 62.6
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1213.7 788 79.6
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1201.8 785 80.0
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1189.5 1022 62.9
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1175.2 961 63.3
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.3e-310 1068.9 704 79.1
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 8.9e-310 1067.0 837 68.1
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 4.1e-307 1058.1 1000 56.7
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.6e-301 1038.9 995 53.8
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 4.4e-301 1038.1 963 56.0
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 4.9e-300 1034.6 948 57.9
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 3.4e-285 985.3 942 55.7
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.7e-281 973.0 743 70.7
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.5e-264 916.0 653 73.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 8.8e-241 837.8 966 47.9
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.1e-238 830.9 616 71.9
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.2e-237 827.4 619 71.7
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 8.0e-226 788.1 971 51.3
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.4e-222 776.5 631 67.4
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 8.5e-220 768.1 563 67.1
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.2e-215 753.4 541 73.6
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.0e-208 730.3 699 52.8
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 9.5e-203 711.4 599 61.6
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 3.7e-183 646.4 1015 42.9
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.3e-179 633.3 564 60.1
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.3e-159 568.2 614 52.0
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-153 548.1 591 55.0
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 8.2e-146 522.3 1014 34.0
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 4.2e-142 510.0 975 32.8
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.1e-131 475.3 407 60.7
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-129 468.8 324 73.1
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 2.5e-118 431.0 967 31.1
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 3.6e-117 427.2 383 64.0
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 7.0e-113 412.9 286 74.8
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 8.5e-111 406.0 364 60.7
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 7.2e-110 402.9 289 71.6
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.2e-109 402.1 276 76.8
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 3.6e-109 400.6 560 48.8
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.5e-107 395.2 311 68.8
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 4.1e-105 387.1 407 50.1
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 7.7e-104 382.9 570 44.2
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 8.5e-103 379.4 265 72.5
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.6e-101 374.0 558 43.7
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 4.3e-94 350.5 277 69.7
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 2.3e-84 318.2 222 70.3
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.3e-84 318.2 392 50.3
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 7.0e-81 306.6 594 37.4
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.7e-79 302.0 299 59.5
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.1e-78 299.3 249 61.8
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.2e-75 289.3 426 46.0
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 5.4e-73 280.4 189 77.2
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-71 275.4 256 62.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 9.5e-70 269.6 219 59.8
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 4.7e-69 267.3 307 49.2
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.3e-66 259.2 241 62.2
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 3.6e-61 241.1 424 41.7
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 4.4e-59 234.2 435 40.5
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.0e-56 223.8 222 58.1
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 2.1e-53 215.3 182 63.7
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 1.5e-51 209.1 154 73.4
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 2.4e-49 201.8 135 72.6
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.2e-49 201.4 163 69.3
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.1e-45 188.7 177 63.8
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 4.9e-42 177.6 233 45.1
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.8e-39 169.1 103 79.6
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 8.7e-39 166.8 124 68.5
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 6.9e-36 157.1 333 36.6
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 3.4e-35 154.8 140 60.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 3.8e-34 151.4 408 34.3
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 4.6e-32 144.4 103 70.9
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 3.8e-26 124.8 170 45.9
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.5e-25 120.9 74 75.7
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 5.5e-25 120.9 74 75.7
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 7.2e-25 120.6 179 43.6
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 3.6e-24 118.2 168 43.5
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 5.1e-23 114.4 122 51.6
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 8.7e-23 113.6 79 70.9
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.5e-22 112.8 72 76.4
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.8e-20 105.9 108 51.9
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 5.5e-09 67.8 53 67.9
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 3.9e-07 61.6 166 33.1
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 2.6e-06 58.9 35 77.1


User provided reference genes

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