Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 2.1e-135 485.7 253 100.0
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 1.6e-45 187.2 202 58.4
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 3.8e-44 182.6 212 58.5
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 1.5e-43 180.6 212 58.5
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 4.0e-41 172.6 214 57.9
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 1.5e-35 154.1 213 44.1
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 7.3e-35 151.8 229 46.3
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 6.2e-34 148.7 181 49.7
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 1.4e-33 147.5 217 47.5
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 1.4e-33 147.5 218 49.5
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 2.3e-33 146.7 217 47.9
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 3.1e-33 146.4 219 50.2
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 6.8e-33 145.2 214 51.9
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 1.5e-32 144.1 218 49.1
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 1.5e-32 144.1 220 47.7
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 2.6e-32 143.3 212 42.5
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 2.4e-30 136.7 213 41.3
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 4.1e-30 136.0 180 45.0
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 2.0e-29 133.7 261 37.9
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 2.7e-29 133.3 182 47.3
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 4.6e-29 132.5 187 44.4
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 1.0e-28 131.3 216 47.2
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 7.3e-27 125.2 190 45.3
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 2.1e-26 123.6 218 46.8
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 3.6e-26 122.9 218 39.4
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 8.1e-26 121.7 285 36.1
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 8.1e-26 121.7 216 47.2
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 1.4e-25 120.9 196 37.2
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 1.2e-24 117.9 227 37.9
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 1.5e-24 117.5 228 45.2
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 1.5e-24 117.5 221 39.4
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 2.6e-24 116.7 176 46.6
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 5.8e-24 115.5 162 46.9
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 7.5e-24 115.2 176 42.6
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 6.4e-23 112.1 217 44.7
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 1.1e-22 111.3 174 42.5
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 1.2e-21 107.8 209 42.6
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 3.5e-21 106.3 170 41.2
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 4.6e-21 105.9 207 37.7
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 1.5e-19 100.9 176 36.9
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.9e-19 100.5 138 42.8
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 7.3e-19 98.6 212 40.6
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 7.3e-19 98.6 209 36.8
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 1.2e-18 97.8 212 40.6
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 1.2e-18 97.8 93 55.9
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 1.6e-18 97.4 209 42.6
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 4.7e-18 95.9 168 37.5
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 6.2e-18 95.5 214 41.6
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 8.1e-18 95.1 174 37.9
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 1.1e-17 94.7 139 41.0
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 1.1e-17 94.7 207 35.3
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 1.1e-17 94.7 215 36.7
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 4.0e-17 92.8 288 30.6
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 5.2e-17 92.4 236 33.9
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 2.6e-16 90.1 207 32.4
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 4.4e-16 89.4 207 33.3
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 5.8e-16 89.0 125 41.6
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 1.3e-15 87.8 72 59.7
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 3.8e-15 86.3 232 30.2
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 1.4e-14 84.3 185 36.2
PGR102G3245 Punica granatum HOM05D007641 ORTHO05D007630 1.9e-14 84.0 208 40.4
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 2.4e-14 83.6 55 70.9
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 5.4e-14 82.4 145 39.3
ATR1127G234 Amborella trichopoda HOM05D007641 ORTHO05D007630 2.7e-13 80.1 188 29.8
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 2.7e-13 80.1 89 50.6
Oeu064683.1 Olea europaea HOM05D007641 ORTHO05D007630 7.8e-13 78.6 129 44.2
BolC4t23545H Brassica oleracea HOM05D001940 ORTHO05D007630 1.3e-12 77.8 220 37.7
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 1.3e-12 77.8 172 32.6
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 1.3e-12 77.8 47 70.2
Thhalv10017756m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 1.5e-11 74.3 54 64.8
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 2.5e-11 73.6 210 32.4
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 4.3e-11 72.8 210 32.4
PSO384G0550 Papaver somniferum HOM05D007641 ORTHO05D007630 7.3e-11 72.0 65 52.3
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 1.2e-10 71.2 247 30.4
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 1.6e-10 70.9 226 29.6
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 2.8e-10 70.1 165 34.5
HPP92_015425 Vanilla planifolia HOM05D007641 ORTHO05D007630 3.6e-10 69.7 239 29.3
Glyma.11G198150 Glycine max HOM05D007641 ORTHO05D007630 1.4e-09 67.8 111 36.0
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 2.4e-09 67.0 174 33.9
BraA05t20424Z Brassica rapa HOM05D001940 ORTHO05D007630 3.1e-09 66.6 215 35.3
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 5.2e-09 65.9 86 43.0
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 1.2e-08 64.7 169 33.1
Nitab4.5_0000002g0280 Nicotiana tabacum HOM05D014625 ORTHO05D007630 1.2e-08 64.7 203 30.5
Zm00001eb336420 Zea mays HOM05D052079 ORTHO05D007630 1.5e-08 64.3 216 32.4
CARHR123930 Cardamine hirsuta HOM05D001940 ORTHO05D007630 9.9e-08 61.6 75 49.3
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 1.3e-07 61.2 58 53.4
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 1.4e-06 57.8 28 92.9


User provided reference genes

Program Settings