Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.1e-98 363.2 179 100.0
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 1.9e-74 282.7 166 85.5
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 2.1e-73 279.3 163 83.4
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 2.1e-73 279.3 163 83.4
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 2.4e-72 275.8 169 81.1
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 3.1e-72 275.4 161 83.9
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.2e-71 273.5 159 84.9
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 1.5e-71 273.1 166 83.1
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.5e-71 273.1 167 79.6
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 2.6e-71 272.3 159 84.3
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 2.6e-71 272.3 169 79.9
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 5.8e-71 271.2 165 81.8
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 2.9e-70 268.9 166 80.1
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 4.9e-70 268.1 170 78.8
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 6.4e-70 267.7 170 77.6
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 8.4e-70 267.3 165 81.2
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 8.4e-70 267.3 164 79.3
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 1.1e-69 266.9 164 80.5
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 3.2e-69 265.4 156 83.3
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 3.2e-69 265.4 159 78.6
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 4.2e-69 265.0 156 83.3
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 4.2e-69 265.0 156 83.3
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 5.4e-69 264.6 175 75.4
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 7.1e-69 264.2 177 75.7
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 9.3e-69 263.8 165 77.6
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.2e-68 263.5 166 78.9
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.2e-68 263.5 142 88.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.2e-68 263.5 165 78.8
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 3.5e-68 261.9 177 74.6
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 4.6e-68 261.5 158 80.4
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 6.0e-68 261.2 176 74.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 1.8e-67 259.6 167 78.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.3e-67 259.2 163 77.9
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 2.3e-67 259.2 170 75.9
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 5.1e-67 258.1 153 82.4
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 6.7e-67 257.7 164 78.0
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 6.7e-67 257.7 157 81.5
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.7e-67 257.7 166 76.5
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 6.7e-67 257.7 144 85.4
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 8.7e-67 257.3 178 73.6
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 2.5e-66 255.8 161 78.3
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 3.3e-66 255.4 170 74.7
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 5.6e-66 254.6 166 77.7
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 9.6e-66 253.8 167 76.6
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 9.6e-66 253.8 170 74.1
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 2.1e-65 252.7 159 78.0
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 3.7e-65 251.9 163 77.3
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 3.7e-65 251.9 163 77.3
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 4.8e-65 251.5 159 76.7
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 1.8e-64 249.6 161 76.4
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 3.1e-64 248.8 163 74.2
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 3.1e-64 248.8 163 76.7
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 4.0e-64 248.4 158 77.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.3e-64 248.1 159 77.4
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 6.9e-64 247.7 143 83.2
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 6.9e-64 247.7 166 70.5
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 9.0e-64 247.3 171 72.5
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.2e-63 246.9 141 83.7
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.5e-63 246.5 162 77.2
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 2.0e-63 246.1 166 75.3
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 2.0e-63 246.1 178 70.8
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 4.5e-63 245.0 133 86.5
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 4.5e-63 245.0 181 69.6
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 5.8e-63 244.6 166 74.7
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.0e-62 243.8 158 76.6
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.7e-62 243.0 167 72.5
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 2.2e-62 242.7 179 69.3
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 2.9e-62 242.3 157 77.1
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 2.9e-62 242.3 167 71.3
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 3.8e-62 241.9 158 75.3
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 3.8e-62 241.9 158 76.6
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 3.8e-62 241.9 158 76.6
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 6.5e-62 241.1 170 72.4
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 8.4e-62 240.7 168 70.8
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 1.4e-61 240.0 153 73.9
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.5e-61 239.2 135 83.0
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 3.2e-61 238.8 159 74.8
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 5.5e-61 238.0 164 71.3
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 5.5e-61 238.0 158 73.4
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 5.5e-61 238.0 158 73.4
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 5.5e-61 238.0 158 73.4
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 5.5e-61 238.0 191 66.0
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 7.1e-61 237.7 158 72.8
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 9.3e-61 237.3 161 71.4
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.6e-60 236.5 158 72.8
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 2.7e-60 235.7 158 72.8
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 2.7e-60 235.7 134 83.6
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 3.5e-60 235.3 158 72.2
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.5e-60 235.3 152 73.7
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 3.5e-60 235.3 159 73.6
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 4.6e-60 235.0 160 72.5
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 6.0e-60 234.6 166 68.7
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.3e-59 233.4 157 72.6
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.8e-59 233.0 162 72.8
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 2.3e-59 232.6 132 82.6
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 3.9e-59 231.9 158 72.2
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 3.9e-59 231.9 164 70.7
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 3.9e-59 231.9 156 73.1
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 5.1e-59 231.5 158 73.4
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 3.3e-58 228.8 133 80.5
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 4.3e-58 228.4 159 69.8
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 2.1e-57 226.1 126 83.3
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 2.1e-57 226.1 123 85.4
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 2.8e-57 225.7 167 67.7
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 6.2e-57 224.6 126 81.7
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 6.2e-57 224.6 126 81.7
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 4.0e-56 221.9 145 74.5
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 2.6e-55 219.2 153 70.6
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.2e-54 216.1 168 66.7
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 3.8e-54 215.3 161 66.5
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 1.1e-53 213.8 114 90.4
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 1.2e-52 210.3 122 82.0
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 5.1e-51 204.9 141 72.3
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 4.8e-49 198.4 157 59.9
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.4e-48 196.1 130 69.2
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 3.2e-45 185.7 127 66.1
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.2e-45 185.7 150 58.7
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 6.7e-43 177.9 150 56.0
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 6.7e-43 177.9 150 56.0
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 9.7e-42 174.1 150 55.3
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 5.9e-39 164.9 110 75.5
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 7.9e-36 154.5 103 72.8
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 2.0e-34 149.8 101 73.3
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 1.3e-33 147.1 78 89.7
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.6e-28 130.2 118 58.5
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 3.9e-27 125.6 81 77.8
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 3.7e-25 119.0 134 46.3
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 5.9e-23 111.7 120 47.5
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 5.5e-21 105.1 140 41.4
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 3.0e-19 99.4 56 80.4
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 3.0e-19 99.4 64 70.3
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.1e-16 90.9 49 83.7
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 2.4e-16 89.7 56 73.2
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 3.5e-15 85.9 71 64.8
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 4.7e-12 75.5 101 43.6
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 6.1e-12 75.1 56 66.1
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 1.0e-11 74.3 59 67.8
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 2.0e-10 70.1 45 66.7
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 1.7e-09 67.0 33 90.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.1e-08 64.3 74 50.0


User provided reference genes

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