Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024513001 Vitis vinifera HOM05D000272 ORTHO05D000164 4.8e-31 137.1 66 100.0
COL.COLO4_25998 Corchorus olitorius HOM05D000272 ORTHO05D000164 8.3e-07 56.6 38 76.3
Duzib132G1260 Durio zibethinus HOM05D000272 ORTHO05D000164 8.3e-07 56.6 38 76.3
SEGI_11998 Sequoiadendron giganteum HOM05D000272 ORTHO05D000164 1.9e-06 55.5 51 58.8
SEGI_14282 Sequoiadendron giganteum HOM05D000272 ORTHO05D000164 1.9e-06 55.5 51 58.8
Aqoxy6G01202 Aquilegia oxysepala HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Ciclev10027952m.g Citrus clementina HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Cc02_g17190 Coffea canephora HOM05D000272 ORTHO05D000164 2.4e-06 55.1 38 76.3
Cc10_g02400 Coffea canephora HOM05D000272 ORTHO05D000164 2.4e-06 55.1 38 71.1
Duzib248G0111 Durio zibethinus HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Gohir.A03G197100 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Gohir.A13G031900 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Gohir.D02G218500 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Gohir.D13G030400 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Gorai.013G034600 Gossypium raimondii HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Hma1.2p1_0851F.1_g228360 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 2.4e-06 55.1 35 80.0
Thecc.02G079800 Theobroma cacao HOM05D000272 ORTHO05D000164 2.4e-06 55.1 37 75.7
Actinidia00557 Actinidia chinensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Actinidia11755 Actinidia chinensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
MSTRG.16830 Avicennia marina HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CSS0000078 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CSS0047451 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CANSAT11G2696 Cannabis sativa HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CAN.G1544.12 Capsicum annuum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Cfa005061 Carpinus fangiana HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CiPaw.05G070400 Carya illinoinensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CiPaw.06G132200 Carya illinoinensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CDE06G0376 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CDE07G1619 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
ClCG11G004100 Citrullus lanatus HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Haze_02321 Corylus avellana HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
MELO3C023333.2 Cucumis melo HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
CsaV3_2G015080 Cucumis sativus L. HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Dinv23484 Davidia involucrata HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
ECA240G0638 Erigeron canadensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Migut.B00204 Erythranthe guttata HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Eucgr.G01703 Eucalyptus grandis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Thhalv10022660m.g Eutrema salsugineum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 37 75.7
FvH4_2g09770 Fragaria vesca HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
FAN20G1287 Fragaria x ananassa HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
FAN24G2720 Fragaria x ananassa HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
FAN27G1397 Fragaria x ananassa HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
HanXRQChr03g0069411 Helianthus annuus HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Lsat_1_v5_gn_9_107800 Lactuca sativa HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Lj9A377T92 Lonicera japonica HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
MBI11_g07620_MAGBIO Magnolia biondii HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Manes.11G082400 Manihot esculenta HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Nitab4.5_0003234g0010 Nicotiana tabacum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Peaxi162Scf00016g00423 Petunia axillaris HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Potri.004G159300 Populus trichocarpa HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Potri.009G120800 Populus trichocarpa HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Prupe.8G089800 Prunus persica HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
PGR042G2700 Punica granatum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
PGR142G1954 Punica granatum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
QL11p045337 Quercus lobata HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Rhsim11G0180900 Rhododendron simsii HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
RcHm_v2.0_Chr6g0266111 Rosa chinensis HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Sabra09G0093100 Salix brachista HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Sed0001561 Sechium edule HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Solyc01g109980.4 Solanum lycopersicum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Sopen01g052170 Solanum pennellii HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
PGSC0003DMG400030961 Solanum tuberosum HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
SGA_v2.0_scaffold58G20496 Striga asiatica HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
TWI31G1132 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
TWI79G1780 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
TAR376G0859 Trochodendron aralioides HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
TAR628G1741 Trochodendron aralioides HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
vmacro02075 Vaccinium macrocarpon HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
GSVIVG01024224001 Vitis vinifera HOM05D000272 ORTHO05D000164 3.2e-06 54.7 35 80.0
Actinidia30994 Actinidia chinensis HOM05D000272 ORTHO05D000164 4.1e-06 54.3 57 52.6
Aa31LG8G13760 Aethionema arabicum HOM05D000272 ORTHO05D000164 4.1e-06 54.3 38 71.1
arahy.Tifrunner.gnm1.ann1.253MV8 Arachis hypogaea HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
arahy.Tifrunner.gnm1.ann1.PU29YL Arachis hypogaea HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
arahy.Tifrunner.gnm1.ann1.WJT401 Arachis hypogaea HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Ca_13382_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Glyma.04G009600 Glycine max HOM05D000272 ORTHO05D000164 4.1e-06 54.3 35 77.1
Glyma.04G029100 Glycine max HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Glyma.06G029100 Glycine max HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Glyma.14G070700 Glycine max HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Glyma.17G254000 Glycine max HOM05D000272 ORTHO05D000164 4.1e-06 54.3 40 67.5
Medtr1g023050 Medicago truncatula HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Phvul.001G011000 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Psat6g007960 Pisum sativum HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
PGSC0003DMG400003751 Solanum tuberosum HOM05D000272 ORTHO05D000164 4.1e-06 54.3 49 57.1
VMungo0647G1666 Vigna mungo HOM05D000272 ORTHO05D000164 4.1e-06 54.3 37 73.0
Atru.chr5.3087 Acer truncatum HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Ah.05g180880 Amaranthus hybridus HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
EL10Ac1g00603 Beta vulgaris HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
AUR62014471 Chenopodium quinoa HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
AUR62034527 Chenopodium quinoa HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Ca_02075_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Dinv31790 Davidia involucrata HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Dinv39460 Davidia involucrata HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
FvH4_2g39260 Fragaria vesca HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
FAN15G1255 Fragaria x ananassa HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
FAN20G0214 Fragaria x ananassa HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
FAN26G1150 Fragaria x ananassa HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
FAN27G1949 Fragaria x ananassa HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
Gohir.A12G042100 Gossypium hirsutum HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Gohir.D12G030200 Gossypium hirsutum HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Gorai.008G031100 Gossypium raimondii HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
MD08G1024200 Malus domestica HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
Medtr3g112300 Medicago truncatula HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
PSO541G5161 Papaver somniferum HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
PSO675G1668 Papaver somniferum HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Phvul.001G011100 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Prupe.1G373600 Prunus persica HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
RcHm_v2.0_Chr6g0301751 Rosa chinensis HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 70.3
Hund17198 Selenicereus undatus HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
Sc15g0007170 Simmondsia chinensis HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
VMungo0647G0235 Vigna mungo HOM05D000272 ORTHO05D000164 5.4e-06 53.9 37 73.0
arahy.Tifrunner.gnm1.ann1.3GQ9MB Arachis hypogaea HOM05D000272 ORTHO05D000164 7.0e-06 53.5 31 87.1
arahy.Tifrunner.gnm1.ann1.X6DXXB Arachis hypogaea HOM05D000272 ORTHO05D000164 7.0e-06 53.5 31 87.1
CSS0025920 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 7.0e-06 53.5 37 73.0
CSS0040879 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 7.0e-06 53.5 37 73.0
Ca_19469_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 7.0e-06 53.5 31 87.1
Dinv31762 Davidia involucrata HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
Duzib052G0773 Durio zibethinus HOM05D000272 ORTHO05D000164 7.0e-06 53.5 37 73.0
Eucgr.I01293 Eucalyptus grandis HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
FAN15G3460 Fragaria x ananassa HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
Gorai.005G246400 Gossypium raimondii HOM05D000272 ORTHO05D000164 7.0e-06 53.5 37 73.0
Hma1.2p1_1194F.1_g265730 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 7.0e-06 53.5 37 70.3
Lj5A193T98 Lonicera japonica HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
Lj1g0003058 Lotus japonicus HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
MD05G1059800 Malus domestica HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
MD10G1068000 Malus domestica HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
Medtr4g051532 Medicago truncatula HOM05D000272 ORTHO05D000164 7.0e-06 53.5 31 87.1
PSO170G6528 Papaver somniferum HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
PSO210G2160 Papaver somniferum HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
Psat7g205080 Pisum sativum HOM05D000272 ORTHO05D000164 7.0e-06 53.5 31 87.1
Sed0007173 Sechium edule HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
SEGI_01313 Sequoiadendron giganteum HOM05D000272 ORTHO05D000164 7.0e-06 53.5 31 87.1
THA.LOC104819622 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 7.0e-06 53.5 37 73.0
TPR.G4617 Trifolium pratense HOM05D000272 ORTHO05D000164 7.0e-06 53.5 31 87.1
unitig_744.g24260 Utricularia gibba HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
HPP92_004393 Vanilla planifolia HOM05D000272 ORTHO05D000164 7.0e-06 53.5 35 77.1
ATR0665G049 Amborella trichopoda HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 77.1
AL3G52570 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
AT2G16400 Arabidopsis thaliana HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
BcaB08g34647 Brassica carinata HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
BcaC01g03022 Brassica carinata HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
A03p45790 Brassica napus HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
C03p57020 Brassica napus HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
BolC3t17980H Brassica oleracea HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
BraA03t13709Z Brassica rapa HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
Carub.0003s3017 Capsella rubella HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
CARHR106650 Cardamine hirsuta HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
Cfa013883 Carpinus fangiana HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 70.3
Haze_22560 Corylus avellana HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 70.3
DCAR_028962 Daucus carota HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 77.1
Dinv42033 Davidia involucrata HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 77.1
Glyma.06G009500 Glycine max HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 74.3
Lalb_Chr11g0062171 Lupinus albus HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 70.3
Lalb_Chr24g0398861 Lupinus albus HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 70.3
Manes.18G021500 Manihot esculenta HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 70.3
Oeu003742.1 Olea europaea HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 77.1
Oeu003743.1 Olea europaea HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 77.1
Sp3g29670 Schrenkiella parvula HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 73.0
SEGI_01898 Sequoiadendron giganteum HOM05D000272 ORTHO05D000164 9.2e-06 53.1 31 87.1
TWI56G1444 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 9.2e-06 53.1 37 70.3
HPP92_011035 Vanilla planifolia HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 74.3
GSVIVG01009781001 Vitis vinifera HOM05D000272 ORTHO05D000164 9.2e-06 53.1 35 77.1


User provided reference genes

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