Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.3e-95 353.2 199 100.0
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 1.2e-80 303.5 200 81.5
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.0e-79 300.4 201 82.6
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 2.2e-79 299.3 199 78.9
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 2.5e-78 295.8 205 77.6
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 5.5e-78 294.7 205 76.1
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 9.3e-78 293.9 198 74.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.7e-77 292.4 200 72.0
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 2.7e-77 292.4 204 73.5
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 6.0e-77 291.2 204 73.5
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 7.9e-77 290.8 204 79.9
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.3e-76 290.0 200 78.0
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.3e-76 290.0 207 74.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 1.9e-75 286.2 197 72.1
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 4.8e-74 281.6 195 82.6
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.1e-73 280.4 202 69.8
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 1.1e-73 280.4 208 75.5
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.8e-73 279.6 201 70.6
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 3.1e-73 278.9 207 67.6
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 4.1e-73 278.5 194 76.8
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 4.1e-73 278.5 205 67.8
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 4.1e-73 278.5 197 72.6
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 6.9e-73 277.7 202 77.7
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 9.0e-73 277.3 201 71.1
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.2e-72 276.9 213 75.6
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 1.2e-72 276.9 201 70.1
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.5e-72 276.6 196 81.1
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 1.5e-72 276.6 195 81.0
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.0e-72 276.2 204 71.6
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 2.6e-72 275.8 204 68.6
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.4e-72 275.4 200 69.0
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 4.5e-72 275.0 201 71.6
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 5.9e-72 274.6 204 73.0
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 7.6e-72 274.2 208 76.9
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.0e-71 273.9 202 71.8
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 1.0e-71 273.9 200 72.0
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 1.3e-71 273.5 199 72.4
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 2.2e-71 272.7 198 70.2
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 2.9e-71 272.3 207 66.2
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 5.0e-71 271.6 205 72.2
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.1e-70 270.4 206 69.4
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.1e-70 270.4 203 72.4
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.9e-70 269.6 205 76.6
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.9e-70 269.6 207 75.8
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-70 269.6 202 67.8
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.2e-70 268.9 206 67.5
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 3.2e-70 268.9 198 74.2
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 4.2e-70 268.5 202 67.3
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 4.2e-70 268.5 177 83.6
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 5.5e-70 268.1 202 80.2
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 7.2e-70 267.7 212 63.7
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 1.6e-69 266.5 180 73.3
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 3.6e-69 265.4 192 76.6
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 3.6e-69 265.4 196 69.4
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 6.1e-69 264.6 203 68.0
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 7.9e-69 264.2 199 68.3
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 7.9e-69 264.2 200 79.5
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.0e-68 263.8 194 80.4
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.0e-68 263.8 193 74.1
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.3e-68 263.5 206 71.4
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.8e-68 263.1 205 65.9
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.3e-68 262.7 199 74.4
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 3.0e-68 262.3 195 74.9
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 3.9e-68 261.9 205 73.7
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 5.1e-68 261.5 199 68.3
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 8.7e-68 260.8 198 77.3
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 8.7e-68 260.8 197 79.7
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 8.7e-68 260.8 209 68.4
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 1.1e-67 260.4 196 73.5
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 1.9e-67 259.6 199 67.8
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.9e-67 259.6 204 74.5
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.9e-67 259.6 185 75.1
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.3e-67 258.8 187 79.1
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 4.3e-67 258.5 203 71.4
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 5.7e-67 258.1 204 67.6
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.3e-66 256.9 195 66.7
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.6e-66 256.5 203 75.4
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 2.8e-66 255.8 202 65.3
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 4.8e-66 255.0 203 75.9
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 4.8e-66 255.0 201 71.6
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 6.3e-66 254.6 197 67.0
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 5.3e-65 251.5 186 75.3
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.2e-64 250.4 180 77.8
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.2e-64 250.4 199 65.8
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 2.6e-64 249.2 199 72.9
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 5.9e-64 248.1 198 66.7
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 5.9e-64 248.1 198 66.7
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 7.7e-64 247.7 198 70.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 7.7e-64 247.7 198 72.7
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 2.2e-63 246.1 200 71.0
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 2.2e-63 246.1 192 77.1
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 3.8e-63 245.4 206 68.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.5e-63 244.2 198 72.2
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 8.5e-63 244.2 199 70.9
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.9e-62 243.0 187 74.3
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 3.2e-62 242.3 206 69.4
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.0e-60 237.3 133 84.2
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.0e-60 237.3 133 84.2
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 8.8e-60 234.2 189 74.1
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.1e-59 233.8 133 83.5
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 2.6e-59 232.6 185 63.8
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.3e-58 230.3 191 70.2
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 2.8e-58 229.2 132 80.3
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 4.8e-58 228.4 205 65.4
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 4.1e-57 225.3 202 61.9
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 9.1e-57 224.2 111 90.1
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 2.9e-55 219.2 204 70.1
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.5e-55 218.0 132 78.0
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 8.5e-55 217.6 113 84.1
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.1e-54 217.2 201 61.2
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 5.5e-54 214.9 150 74.0
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.3e-50 203.8 126 73.8
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 4.8e-50 201.8 112 81.2
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 6.3e-50 201.4 107 86.9
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 2.0e-48 196.4 161 77.0
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 6.5e-47 191.4 109 78.0
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 8.5e-47 191.0 155 61.9
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 3.2e-46 189.1 108 80.6
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 4.2e-46 188.7 91 94.5
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 3.7e-34 149.1 82 81.7
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 7.0e-33 144.8 205 44.9
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.2e-29 134.0 101 56.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 1.5e-27 127.1 121 56.2
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 7.5e-27 124.8 123 70.7
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 2.4e-25 119.8 59 89.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.0e-24 116.7 209 45.9
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.7e-23 113.6 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 4.7e-21 105.5 97 51.5
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 7.0e-17 91.7 83 55.4
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 2.1e-13 80.1 100 41.0
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 4.4e-11 72.4 35 88.6
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 5.8e-11 72.0 85 47.1
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-09 67.0 106 45.3
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.2e-09 66.2 45 62.2
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.5e-08 62.8 84 71.4
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 6.6e-07 58.5 34 73.5
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 2.5e-06 56.6 83 42.2


User provided reference genes

Program Settings