Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 6.0e-153 544.3 299 100.0
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 5.9e-44 182.2 318 45.6
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 4.0e-40 169.5 295 45.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 6.8e-40 168.7 285 48.4
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 9.8e-39 164.9 285 49.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.6e-36 157.5 290 45.2
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.0e-36 157.1 222 48.6
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.7e-35 154.1 344 43.9
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.0e-35 153.3 293 42.7
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.6e-35 152.1 256 44.1
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 8.6e-35 151.8 352 40.3
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.5e-34 151.0 344 43.6
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 5.6e-34 149.1 131 67.2
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 5.2e-32 142.5 347 40.1
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 4.4e-31 139.4 304 40.1
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.9e-29 134.0 267 42.3
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 4.1e-29 132.9 212 49.1
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.4e-29 132.5 301 40.5
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.2e-29 131.7 269 42.0
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 9.2e-29 131.7 290 41.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.3e-27 127.9 304 38.8
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.3e-27 127.1 309 39.8
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 5.1e-27 125.9 312 38.1
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.5e-26 124.4 296 38.9
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 5.6e-26 122.5 314 39.2
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 4.7e-25 119.4 329 36.8
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 6.2e-25 119.0 186 48.9
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.1e-24 118.2 322 34.8
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.3e-24 117.1 274 38.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.1e-24 116.7 269 37.9
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.1e-24 116.7 269 37.9
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.8e-24 115.5 273 38.8
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 6.8e-24 115.5 357 34.5
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 8.9e-24 115.2 329 38.6
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 8.9e-24 115.2 309 37.5
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 2.0e-23 114.0 278 38.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.0e-23 114.0 310 34.8
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.0e-23 114.0 282 38.3
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 2.6e-23 113.6 280 37.9
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.4e-23 113.2 329 35.9
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.4e-23 113.2 320 35.6
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 5.8e-23 112.5 303 36.3
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 9.9e-23 111.7 281 39.1
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.7e-22 110.9 297 38.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.7e-22 110.9 297 38.7
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-22 110.5 301 37.9
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.9e-22 110.2 215 41.4
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 6.4e-22 109.0 297 38.4
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 8.3e-22 108.6 334 34.7
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.9e-21 107.5 299 37.5
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.9e-21 107.5 287 34.5
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.1e-21 106.3 314 33.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 7.1e-21 105.5 175 45.1
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 4.6e-20 102.8 332 35.2
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 6.0e-20 102.4 307 34.2
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 6.0e-20 102.4 265 37.7
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.3e-19 101.3 298 34.6
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-19 100.9 219 37.0
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.3e-19 100.5 302 37.7
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.0e-19 100.1 265 38.9
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 3.9e-19 99.8 236 37.3
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.1e-19 99.4 294 34.4
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 5.1e-19 99.4 269 35.7
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 5.1e-19 99.4 315 37.1
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 6.6e-19 99.0 299 34.4
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 6.6e-19 99.0 292 37.0
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.6e-19 99.0 269 38.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 8.6e-19 98.6 163 47.9
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.1e-18 98.2 315 34.3
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.5e-18 97.8 259 36.3
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-18 97.8 297 35.4
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.9e-18 97.4 310 34.8
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.9e-18 97.4 334 34.7
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.9e-18 97.4 284 35.9
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.5e-18 97.1 327 33.9
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.3e-18 96.7 300 35.0
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 5.6e-18 95.9 160 44.4
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 5.6e-18 95.9 256 35.2
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 7.3e-18 95.5 305 34.1
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 7.3e-18 95.5 334 34.4
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 7.3e-18 95.5 332 33.7
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 9.5e-18 95.1 243 35.0
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-17 94.7 173 42.8
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.2e-17 94.7 173 42.8
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-17 94.4 294 35.7
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-17 94.4 294 35.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.1e-17 94.0 308 33.4
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 2.8e-17 93.6 339 32.2
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 4.7e-17 92.8 281 35.6
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 4.7e-17 92.8 281 35.6
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 4.7e-17 92.8 308 35.4
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 4.7e-17 92.8 243 36.2
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.7e-17 92.8 283 37.8
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 4.7e-17 92.8 308 30.8
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 4.7e-17 92.8 336 31.2
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 6.2e-17 92.4 307 35.2
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 8.1e-17 92.0 128 49.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 8.1e-17 92.0 347 33.7
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.4e-16 90.5 283 33.9
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 4.0e-16 89.7 311 32.8
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 6.8e-16 89.0 317 33.8
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.2e-15 88.2 342 31.9
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-15 88.2 306 35.3
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-15 87.8 277 33.9
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 2.6e-15 87.0 279 34.1
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 4.4e-15 86.3 299 33.8
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 5.8e-15 85.9 292 35.3
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.3e-14 84.7 351 34.2
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.7e-14 84.3 276 35.5
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.7e-14 84.3 283 33.6
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.7e-14 84.3 155 40.6
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 4.9e-14 82.8 279 33.3
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 4.9e-14 82.8 267 32.6
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 6.4e-14 82.4 258 31.4
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.4e-13 81.3 352 32.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.4e-13 80.5 303 30.7
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 3.2e-13 80.1 299 30.4
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 5.4e-13 79.3 278 33.5
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.4e-13 79.3 358 31.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.2e-12 78.2 259 31.7
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.6e-12 77.8 104 45.2
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 3.5e-12 76.6 264 34.5
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.5e-12 76.6 292 30.8
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 4.6e-12 76.3 304 30.9
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 4.6e-12 76.3 302 32.1
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 6.0e-12 75.9 284 33.5
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 7.8e-12 75.5 299 32.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.0e-11 75.1 280 32.1
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 1.7e-11 74.3 243 34.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 6.6e-11 72.4 227 33.5
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-10 70.5 152 40.8
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.6e-09 66.6 312 32.1
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.6e-09 66.6 332 29.8
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.6e-09 66.6 108 42.6
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 8.1e-09 65.5 269 29.4
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.0e-08 63.2 280 32.9
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 5.3e-08 62.8 39 76.9
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 5.3e-08 62.8 316 29.4
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 6.9e-08 62.4 43 72.1
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.2e-07 61.6 104 37.5
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 3.4e-07 60.1 114 44.7
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 4.4e-07 59.7 277 30.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 4.4e-07 59.7 111 39.6
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 9.9e-07 58.5 299 30.4
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.9e-06 57.0 39 66.7
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 3.8e-06 56.6 36 75.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 3.8e-06 56.6 36 75.0


User provided reference genes

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