Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 2.9e-63 245.0 118 100.0
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.2e-35 153.3 120 65.0
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 5.8e-35 151.0 120 65.8
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 9.9e-35 150.2 127 60.6
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 1.3e-34 149.8 120 62.5
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.9e-34 148.7 120 63.3
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.9e-33 146.0 120 60.8
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 3.2e-33 145.2 122 63.1
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 1.2e-32 143.3 120 60.0
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 2.1e-32 142.5 122 59.8
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.1e-32 142.5 121 56.2
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 2.1e-32 142.5 138 55.1
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 3.5e-32 141.7 121 61.2
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 4.6e-32 141.4 120 62.5
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 4.6e-32 141.4 120 60.8
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 6.0e-32 141.0 120 60.8
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 7.8e-32 140.6 120 59.2
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 1.3e-31 139.8 120 60.0
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 1.3e-31 139.8 120 60.0
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.3e-31 139.8 120 60.8
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.7e-31 139.4 120 60.0
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 1.7e-31 139.4 120 58.3
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.3e-31 139.0 120 58.3
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.3e-31 139.0 120 59.2
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 2.3e-31 139.0 118 57.6
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 3.0e-31 138.7 120 60.0
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 5.1e-31 137.9 120 58.3
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 6.6e-31 137.5 120 58.3
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 6.6e-31 137.5 120 60.0
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 6.6e-31 137.5 120 59.2
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 8.6e-31 137.1 120 59.2
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.1e-30 136.7 120 59.2
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 3.3e-30 135.2 121 58.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 3.3e-30 135.2 122 57.4
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 4.3e-30 134.8 122 58.2
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 5.6e-30 134.4 120 57.5
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 5.6e-30 134.4 122 58.2
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 5.6e-30 134.4 122 54.9
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 9.6e-30 133.7 120 59.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 9.6e-30 133.7 120 56.7
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 9.6e-30 133.7 121 58.7
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 9.6e-30 133.7 122 57.4
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.2e-29 133.3 120 57.5
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.2e-29 133.3 122 56.6
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 2.1e-29 132.5 120 56.7
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 2.1e-29 132.5 124 57.3
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 2.8e-29 132.1 137 53.3
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.7e-29 131.3 119 57.1
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 6.2e-29 131.0 124 55.6
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 6.2e-29 131.0 121 56.2
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.1e-28 130.2 123 56.1
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.4e-28 129.8 120 57.5
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.8e-28 129.4 118 58.5
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.4e-28 129.0 121 55.4
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 3.1e-28 128.6 120 56.7
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.1e-28 128.6 120 56.7
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 4.0e-28 128.3 118 54.2
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 6.9e-28 127.5 118 57.6
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 8.9e-28 127.1 132 51.5
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 8.9e-28 127.1 122 54.9
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.2e-27 126.7 120 55.8
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.5e-27 126.3 121 56.2
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 2.0e-27 125.9 121 57.0
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.6e-27 125.6 121 53.7
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.4e-27 125.2 123 55.3
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 3.4e-27 125.2 118 55.1
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.4e-27 125.2 124 54.0
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 3.4e-27 125.2 119 55.5
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.4e-27 125.2 130 49.2
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.8e-27 124.4 120 55.0
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.8e-27 124.4 120 55.8
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 9.9e-27 123.6 123 55.3
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 9.9e-27 123.6 117 55.6
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 9.9e-27 123.6 122 53.3
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.7e-26 122.9 121 56.2
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.2e-26 122.5 122 55.7
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 3.8e-26 121.7 121 52.9
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 3.8e-26 121.7 123 53.7
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 8.4e-26 120.6 123 53.7
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 8.4e-26 120.6 123 53.7
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.9e-25 119.4 121 53.7
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 3.2e-25 118.6 121 49.6
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 4.2e-25 118.2 128 50.0
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 4.2e-25 118.2 121 52.1
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 5.4e-25 117.9 120 50.8
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 7.1e-25 117.5 122 54.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 9.3e-25 117.1 127 52.8
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 9.3e-25 117.1 128 50.0
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 9.3e-25 117.1 119 52.1
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.2e-24 116.7 122 53.3
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.2e-24 116.7 116 51.7
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.6e-24 116.3 87 63.2
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.1e-24 115.9 118 54.2
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 2.1e-24 115.9 120 51.7
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 3.5e-24 115.2 123 49.6
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 6.0e-24 114.4 118 53.4
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 7.8e-24 114.0 122 52.5
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.0e-23 113.6 121 50.4
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 2.3e-23 112.5 120 50.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 3.0e-23 112.1 122 50.0
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 3.0e-23 112.1 115 52.2
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 8.7e-23 110.5 121 48.8
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.1e-22 110.2 124 49.2
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.5e-22 109.8 119 52.1
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.9e-22 109.4 114 55.3
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 7.3e-22 107.5 118 50.0
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 9.6e-22 107.1 122 48.4
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.6e-21 106.3 115 50.4
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 4.8e-21 104.8 118 51.7
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 8.1e-21 104.0 136 41.9
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 6.9e-20 100.9 65 69.2
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.9e-20 100.9 112 49.1
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 1.2e-19 100.1 108 50.0
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.9e-18 95.5 85 51.8
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 4.2e-17 91.7 125 44.8
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 2.1e-16 89.4 130 40.0
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 4.6e-16 88.2 120 40.0
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.0e-15 87.0 86 51.2
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.3e-15 86.7 103 39.8
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.3e-15 86.7 118 41.5
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 5.1e-15 84.7 113 38.1
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.1e-15 84.7 61 59.0
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.9e-14 82.8 127 43.3
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.3e-14 82.0 56 64.3
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.3e-13 80.1 85 38.8
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 4.8e-13 78.2 79 46.8
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 1.1e-12 77.0 112 41.1
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.4e-12 76.6 62 53.2
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.4e-12 75.9 88 52.3
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 2.4e-12 75.9 65 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 3.1e-12 75.5 59 50.8
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 6.9e-12 74.3 92 41.3
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 4.5e-11 71.6 98 41.8
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.3e-10 70.1 62 46.8
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 6.4e-10 67.8 70 44.3
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 6.0e-08 61.2 76 38.2
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.3e-07 60.1 39 64.1
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.3e-07 60.1 109 33.9
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 1.3e-07 60.1 67 43.3
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.0e-07 58.9 89 38.2
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 8.7e-07 57.4 46 52.2


User provided reference genes

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