Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 2.6e-305 1051.2 519 100.0
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 3.7e-227 791.6 491 80.2
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 4.9e-219 764.6 489 78.9
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 1.8e-218 762.7 489 79.3
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 1.2e-217 760.0 492 78.5
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 5.9e-217 757.7 487 78.9
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 1.3e-216 756.5 530 73.6
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 1.7e-216 756.1 480 79.0
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 3.3e-215 751.9 474 78.9
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 4.3e-215 751.5 439 83.8
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 8.0e-214 747.3 457 81.2
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 1.0e-213 746.9 488 76.0
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 1.4e-213 746.5 454 80.4
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 1.8e-213 746.1 479 78.7
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 1.8e-213 746.1 509 75.6
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 2.3e-213 745.7 455 81.5
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 4.4e-212 741.5 488 76.8
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.7e-211 739.6 450 80.2
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 6.4e-211 737.6 516 72.9
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 1.4e-210 736.5 445 82.0
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 5.4e-210 734.6 450 79.8
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 9.2e-210 733.8 439 83.1
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 2.7e-209 732.3 490 76.1
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 4.6e-209 731.5 450 79.3
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 8.6e-208 727.2 474 77.6
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 8.6e-208 727.2 452 79.0
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 5.6e-207 724.5 453 79.7
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 5.6e-207 724.5 433 80.6
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 6.2e-206 721.1 427 82.2
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 8.1e-206 720.7 424 82.3
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 1.4e-205 719.9 443 79.9
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 1.8e-205 719.5 497 72.8
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 3.1e-205 718.8 493 73.6
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 1.4e-202 709.9 503 71.2
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 1.2e-201 706.8 428 80.6
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 3.5e-201 705.3 491 72.9
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 3.5e-201 705.3 449 77.5
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 3.5e-201 705.3 442 78.7
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 3.5e-201 705.3 443 78.1
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 4.6e-201 704.9 452 76.5
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 6.0e-201 704.5 454 76.2
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 7.8e-201 704.1 582 65.5
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 7.8e-201 704.1 446 76.0
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 2.3e-200 702.6 478 74.1
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 6.6e-200 701.0 488 74.8
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 6.6e-200 701.0 464 75.4
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 1.1e-199 700.3 477 71.9
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 4.3e-199 698.4 431 78.4
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 2.1e-198 696.0 480 73.3
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 3.6e-198 695.3 424 79.5
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 1.1e-197 693.7 460 73.9
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 1.4e-197 693.3 499 69.7
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 1.8e-197 693.0 452 74.1
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 1.8e-197 693.0 472 71.6
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 2.0e-196 689.5 423 79.0
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 2.0e-196 689.5 486 70.2
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 2.6e-196 689.1 471 71.8
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 4.4e-196 688.3 473 71.2
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 2.2e-195 686.0 473 71.0
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 8.4e-195 684.1 473 70.8
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.2e-193 680.2 421 79.6
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 2.5e-191 672.5 427 76.1
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 5.6e-191 671.4 498 69.1
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 1.2e-190 670.2 378 85.4
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 2.4e-189 666.0 444 74.5
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 5.8e-188 661.4 487 70.4
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 3.2e-186 655.6 498 67.7
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 9.3e-186 654.1 387 81.7
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 2.1e-185 652.9 380 83.4
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 1.7e-184 649.8 384 82.0
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 7.3e-183 644.4 461 70.3
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 1.1e-181 640.6 387 78.6
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 1.5e-180 636.7 389 77.9
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 2.0e-180 636.3 442 71.5
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 2.7e-177 625.9 439 74.3
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 3.5e-177 625.5 382 76.4
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 6.0e-177 624.8 488 65.6
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 1.3e-174 617.1 338 87.6
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 7.1e-170 601.3 408 72.3
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 3.0e-168 595.9 422 69.7
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.3e-166 590.5 490 64.7
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 2.1e-166 589.7 489 65.0
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 3.7e-166 589.0 379 75.5
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 2.2e-163 579.7 444 66.9
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 9.6e-159 564.3 437 62.9
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 2.4e-157 559.7 439 65.6
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 1.2e-156 557.4 352 75.6
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 1.2e-156 557.4 420 63.8
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 2.0e-148 530.0 361 71.5
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 1.3e-147 527.3 320 78.8
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 1.8e-136 490.3 435 57.9
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 3.2e-130 469.5 483 53.8
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 1.4e-117 427.6 265 76.6
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 6.5e-115 418.7 463 48.2
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 5.9e-108 395.6 246 76.0
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 9.2e-101 371.7 330 61.5
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 3.5e-100 369.8 330 61.5
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 3.0e-99 366.7 437 46.2
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 2.2e-94 350.5 202 81.2
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 8.1e-89 332.0 263 60.5
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 1.4e-85 321.2 225 73.3
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 1.6e-76 291.2 214 70.1
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 1.9e-69 267.7 307 52.8
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 1.2e-68 265.0 179 70.9
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 3.9e-59 233.4 457 37.4
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 4.3e-58 229.9 164 68.9
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 8.5e-38 162.5 105 73.3
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 7.9e-36 156.0 93 79.6
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 5.9e-31 139.8 89 76.4
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 5.9e-31 139.8 85 81.2
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 3.1e-16 90.9 58 70.7
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 8.0e-12 76.3 42 88.1
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 1.6e-07 62.0 91 40.7


User provided reference genes

Program Settings