Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.4e-240 835.9 427 100.0
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.3e-166 589.3 425 70.8
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 9.1e-163 577.4 412 72.6
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 7.4e-157 557.8 427 67.0
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 8.2e-156 554.3 428 67.5
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.2e-154 550.4 428 66.6
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.3e-153 547.0 427 67.2
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 2.9e-153 545.8 398 69.3
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.9e-153 545.8 427 68.1
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 1.9e-152 543.1 427 66.5
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 2.5e-152 542.7 427 66.3
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 2.5e-152 542.7 423 65.5
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.3e-150 536.2 428 66.6
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 5.2e-150 535.0 425 67.1
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 5.2e-150 535.0 426 66.0
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.5e-149 533.5 429 64.6
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 7.4e-149 531.2 429 64.3
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 2.4e-147 526.2 392 68.9
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.4e-147 526.2 428 64.3
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 2.6e-141 506.1 414 63.3
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 4.4e-141 505.4 379 68.1
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 1.3e-140 503.8 391 66.8
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 6.3e-140 501.5 409 63.8
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 8.2e-140 501.1 398 65.6
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.8e-139 500.0 391 65.7
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 5.3e-139 498.4 431 61.3
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 9.1e-139 497.7 427 60.4
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.2e-138 497.3 391 65.5
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 2.2e-137 493.0 419 62.3
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 5.0e-137 491.9 430 61.9
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 8.5e-137 491.1 401 62.8
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.1e-136 490.7 447 60.6
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.9e-136 490.0 411 63.0
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 7.2e-136 488.0 391 63.4
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 9.4e-136 487.6 386 65.3
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 1.2e-135 487.3 391 63.2
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.6e-135 486.9 386 63.0
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 2.1e-135 486.5 398 64.1
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.1e-135 486.5 390 64.4
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 6.1e-135 485.0 390 64.1
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.0e-134 484.2 398 63.1
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.8e-134 483.4 371 67.7
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.3e-134 483.0 429 60.1
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 8.8e-134 481.1 395 63.5
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 8.8e-134 481.1 392 64.8
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.2e-133 480.7 385 63.4
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 2.6e-133 479.6 388 64.7
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 9.8e-133 477.6 428 59.1
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.7e-132 475.7 391 62.7
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 6.3e-132 474.9 396 61.1
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.6e-130 470.3 432 59.0
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.5e-130 468.8 390 62.1
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.5e-128 463.0 448 58.7
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 2.8e-127 459.5 390 62.3
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 1.4e-126 457.2 388 62.1
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 2.3e-126 456.4 385 64.7
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 6.8e-126 454.9 357 65.0
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 7.5e-125 451.4 413 59.6
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 2.3e-121 439.9 428 55.1
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 3.8e-121 439.1 372 62.4
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.5e-120 436.4 329 68.7
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 9.5e-120 434.5 383 62.1
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 2.8e-119 433.0 395 57.2
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.0e-118 431.0 392 57.7
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.4e-118 430.6 384 58.9
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 8.9e-118 427.9 426 53.8
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 2.6e-117 426.4 448 53.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 7.5e-117 424.9 392 55.9
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 6.0e-114 415.2 432 53.2
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 6.6e-113 411.8 390 57.7
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.1e-112 411.0 323 67.5
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.9e-112 410.2 355 64.5
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 8.9e-110 401.4 387 56.1
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 2.2e-108 396.7 387 54.3
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.1e-107 392.5 395 55.7
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 1.2e-106 391.0 387 53.7
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.0e-105 387.9 420 50.0
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 3.0e-105 386.3 391 52.7
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.9e-105 386.0 376 55.9
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 5.1e-105 385.6 387 52.7
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 4.3e-104 382.5 287 70.0
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 2.1e-103 380.2 380 58.2
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.8e-103 379.8 386 53.6
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 4.0e-102 375.9 398 50.5
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 6.8e-102 375.2 387 52.2
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 3.7e-100 369.4 392 51.0
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.9e-99 367.1 392 51.5
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.9e-99 367.1 335 56.4
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 4.1e-99 365.9 392 51.0
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 1.2e-98 364.4 392 51.0
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 1.2e-98 364.4 392 51.0
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 2.1e-98 363.6 381 51.7
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.6e-98 362.5 335 55.8
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 1.1e-96 357.8 413 48.7
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.5e-96 357.5 392 50.3
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 6.6e-89 332.0 414 46.4
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.5e-85 320.9 388 49.2
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.2e-82 311.2 319 54.2
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 5.1e-81 305.8 334 51.2
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.1e-80 304.7 393 46.3
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.5e-80 304.3 311 55.0
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.2e-77 294.7 368 47.6
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.7e-76 290.8 407 42.8
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.9e-68 263.5 356 45.2
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 8.4e-68 261.9 424 39.4
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 4.5e-61 239.6 364 41.5
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 9.3e-59 231.9 251 49.0
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 5.3e-54 216.1 402 35.3
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.4e-51 208.0 337 39.2
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.8e-46 191.0 188 53.7
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.6e-40 170.6 179 52.0
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.4e-38 164.9 151 55.0
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 3.1e-38 163.7 400 33.5
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 5.3e-38 162.9 196 48.0
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.2e-35 152.5 342 31.3
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 4.7e-34 149.8 392 31.4
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.7e-33 146.0 160 52.5
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 7.4e-32 142.5 171 48.5
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 7.4e-32 142.5 171 48.5
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 8.2e-31 139.0 347 31.1
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 1.7e-28 131.3 241 37.8
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.7e-28 131.3 110 55.5
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 5.0e-28 129.8 73 84.9
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 5.5e-27 126.3 100 64.0
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.5e-24 118.2 107 61.7
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.7e-24 116.3 123 47.2
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 8.3e-23 112.5 99 60.6
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.5e-21 107.1 107 55.1
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 4.5e-21 106.7 78 69.2
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.3e-17 94.4 115 45.2
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.4e-16 90.1 71 64.8
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 4.4e-16 90.1 71 64.8
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 1.8e-06 58.2 41 75.6
Lsat_1_v5_gn_3_139021 Lactuca sativa HOM05D000115 ORTHO05D000645 5.4e-06 56.6 34 73.5
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 9.2e-06 55.8 61 50.8


User provided reference genes

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