Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 2986.1 1506 100.0
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1761.9 1597 59.1
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1737.2 1606 59.0
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1735.7 1597 59.3
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1677.1 1613 57.2
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1662.9 1615 56.8
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1662.1 1734 54.0
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1646.7 1297 65.8
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1645.9 1629 56.4
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1638.6 1696 54.4
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1633.6 1651 55.0
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1630.2 1592 56.8
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1600.5 1656 54.2
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1591.2 1659 52.3
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1585.1 1591 55.6
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1577.4 1652 54.1
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1574.3 1666 54.0
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1563.5 1562 54.7
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1562.7 1647 53.9
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1540.4 1648 53.2
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1503.0 1583 52.9
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1501.1 1560 53.7
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1500.7 1370 59.0
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1497.3 1536 53.8
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1493.4 1585 52.9
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1485.3 1625 52.2
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1484.2 1554 53.2
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1483.0 1647 51.4
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1478.8 1560 52.6
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1477.2 1546 53.2
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1474.9 1591 51.5
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1473.0 1545 52.9
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1469.9 1545 52.5
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1469.5 1623 50.6
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1466.1 1588 51.2
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1464.5 1558 52.1
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1452.2 1585 50.4
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1450.6 1604 50.9
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1441.8 1626 50.2
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1434.1 1596 50.6
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1429.5 1371 56.8
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1427.2 1548 52.4
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1422.1 1604 49.8
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1414.8 1247 59.3
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1411.7 1596 50.6
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1411.4 1645 49.4
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1396.3 1638 49.6
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1395.6 1568 50.3
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1395.6 1536 49.9
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1387.9 1528 50.5
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1385.5 1608 50.2
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1383.2 1663 48.5
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1377.8 1634 48.5
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1369.4 1591 49.1
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1367.4 1591 49.0
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1361.7 1571 50.2
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1359.0 1797 45.1
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1358.6 1368 54.3
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1357.8 1674 47.8
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1355.9 1591 48.4
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1355.9 1599 48.5
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1350.9 1589 48.0
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1349.7 1568 50.4
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 0.0e+00 1348.2 1496 52.5
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1342.4 1586 48.8
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1338.6 1556 49.2
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1338.6 1506 49.9
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1331.6 1525 50.3
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1328.5 1473 51.5
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1327.8 1632 48.3
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1323.5 1607 48.4
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1310.8 1615 47.4
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1279.2 1719 45.1
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1263.8 1659 46.4
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1261.9 1566 47.6
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1258.0 1503 48.6
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1254.2 1526 46.9
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1243.0 1496 48.1
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1243.0 1515 47.3
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1242.3 1594 45.8
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1227.6 1581 46.0
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1171.0 993 60.8
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1170.2 1671 41.8
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 0.0e+00 1166.4 1516 46.4
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 0.0e+00 1163.7 1577 45.2
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 0.0e+00 1144.4 1485 45.3
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 0.0e+00 1139.4 1079 55.6
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1121.3 1314 48.8
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 0.0e+00 1117.4 1558 42.5
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 0.0e+00 1115.1 1313 48.8
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 0.0e+00 1113.6 1319 48.6
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 0.0e+00 1110.1 1313 48.7
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 0.0e+00 1077.0 1547 43.5
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 2.3e-293 1013.1 1627 41.1
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 2.6e-289 999.6 958 54.5
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 1.3e-285 987.3 1542 41.1
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 1.2e-214 751.5 1536 36.5
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 3.2e-202 710.3 977 44.1
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 3.4e-196 690.3 797 50.3
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 2.7e-193 680.6 1491 33.3
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.1e-191 675.2 1581 31.5
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 4.8e-174 616.7 1714 30.5
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 3.1e-173 614.0 562 57.5
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 7.3e-167 592.8 788 43.8
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 4.6e-161 573.5 897 39.0
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 2.0e-148 531.6 816 40.2
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 1.1e-143 515.8 1450 30.4
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 2.4e-141 508.1 1234 28.9
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 1.5e-140 505.4 700 44.0
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 7.9e-137 493.0 537 49.9
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 3.9e-136 490.7 670 46.0
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.2e-124 452.6 400 60.0
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 2.5e-114 418.3 540 46.5
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 8.8e-112 409.8 296 72.3
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.3e-110 406.0 506 45.5
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.3e-99 369.4 597 41.5
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.2e-73 283.1 242 60.7
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 3.3e-66 258.5 446 39.0
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 4.0e-64 251.5 419 38.9
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.2e-54 219.2 160 69.4
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 2.4e-48 199.1 412 36.4
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 2.6e-47 195.7 285 44.2
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 8.4e-46 190.7 949 24.9
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 9.0e-40 170.6 291 43.0
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.8e-39 167.9 223 42.6
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 1.3e-38 166.8 327 38.2
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 6.9e-32 144.4 130 60.0
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.0e-31 142.9 197 40.1
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.5e-31 141.7 197 40.1
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 5.9e-31 141.4 132 55.3
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.3e-30 140.2 197 40.6
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.3e-30 140.2 197 39.1
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 2.5e-29 136.0 131 56.5
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.2e-29 135.6 168 42.3
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 3.2e-29 135.6 122 54.9
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.9e-28 131.0 182 39.0
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 8.7e-27 127.5 96 64.6
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 9.7e-26 124.0 126 46.8
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 3.1e-24 119.0 203 39.4
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.5e-22 110.9 144 41.0
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-21 109.8 144 40.3
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.2e-21 108.6 144 40.3
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.7e-20 105.9 144 39.6
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.6e-20 105.5 144 39.6
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 1.8e-19 103.2 161 39.8
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.3e-19 102.8 121 43.0
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 1.1e-16 94.0 62 71.0
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.0e-15 89.7 140 37.9
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 5.0e-14 85.1 70 61.4
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 2.7e-12 79.3 108 42.6
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 6.1e-12 78.2 642 21.8
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 6.7e-11 74.7 345 24.1
Medtr2g060600 Medicago truncatula HOM05D004423 ORTHO05D005464 1.8e-08 66.6 85 41.2
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 7.7e-07 61.2 103 39.8
GSVIVG01038038001 Vitis vinifera HOM05D008944 ORTHO05D012715 1.3e-06 60.5 57 57.9
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 8.5e-06 57.8 107 31.8


User provided reference genes

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