Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.0e-65 252.3 130 100.0
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.6e-33 146.4 117 66.7
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.9e-31 139.4 119 64.7
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 4.3e-31 138.3 112 66.1
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.1e-29 133.7 117 62.4
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.3e-29 132.5 112 64.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.2e-29 131.3 112 62.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 2.6e-28 129.0 112 62.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.4e-28 128.6 110 60.9
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.4e-28 128.6 110 60.9
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 3.4e-28 128.6 104 63.5
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.8e-28 127.9 112 64.3
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.9e-28 127.1 112 64.3
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.3e-27 126.7 109 63.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.3e-27 126.7 115 61.7
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 2.2e-27 125.9 149 53.0
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.2e-27 125.9 149 53.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.9e-27 125.6 105 64.8
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.9e-27 125.6 105 64.8
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.9e-27 125.6 105 64.8
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.9e-27 125.6 113 61.9
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 3.7e-27 125.2 104 60.6
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 3.7e-27 125.2 112 59.8
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.3e-27 124.0 110 59.1
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.9e-26 122.9 114 58.8
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-26 121.7 104 63.5
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-26 121.7 104 63.5
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 5.4e-26 121.3 116 56.9
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.1e-26 120.9 113 61.1
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 9.2e-26 120.6 151 49.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 9.2e-26 120.6 104 63.5
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.1e-25 119.4 136 52.2
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 3.5e-25 118.6 112 61.6
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 6.0e-25 117.9 97 64.9
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 6.0e-25 117.9 113 59.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.3e-24 116.7 104 66.3
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.3e-24 116.7 116 56.0
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-24 116.7 117 56.4
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.7e-24 116.3 112 60.7
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.3e-24 115.9 112 59.8
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.0e-24 115.5 109 61.5
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 5.1e-24 114.8 113 58.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 8.6e-24 114.0 111 58.6
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.5e-23 113.2 114 54.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.9e-23 112.8 111 63.1
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.9e-23 112.8 95 64.2
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.5e-23 112.5 108 61.1
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 9.5e-23 110.5 114 58.8
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.6e-22 109.8 105 56.2
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 2.1e-22 109.4 114 53.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 3.6e-22 108.6 116 56.0
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.6e-22 108.6 114 53.5
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 6.2e-22 107.8 114 52.6
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 8.1e-22 107.5 112 54.5
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.1e-21 107.1 124 50.8
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.4e-21 105.9 117 54.7
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.1e-21 105.5 111 56.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 4.0e-21 105.1 117 53.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.2e-21 104.8 94 60.6
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.8e-21 104.4 100 56.0
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.9e-21 104.0 110 57.3
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 8.9e-21 104.0 114 53.5
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-20 103.6 97 61.9
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.5e-20 103.2 117 53.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.4e-20 102.1 117 53.0
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.4e-20 102.1 97 60.8
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.4e-20 101.7 110 55.5
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.4e-20 101.7 103 54.4
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 7.6e-20 100.9 102 54.9
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 9.9e-20 100.5 112 52.7
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.3e-19 100.1 135 51.9
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.7e-19 99.8 96 58.3
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 2.9e-19 99.0 112 54.5
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 3.8e-19 98.6 123 48.0
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 6.4e-19 97.8 104 52.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 8.4e-19 97.4 99 52.5
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.4e-18 96.7 69 75.4
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.4e-18 96.7 105 53.3
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.9e-18 96.3 103 49.5
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.4e-18 95.9 109 49.5
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.4e-18 95.9 102 52.0
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 4.6e-17 91.7 111 45.9
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 6.0e-17 91.3 98 55.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.3e-16 90.1 133 46.6
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.3e-16 89.4 122 45.1
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.0e-16 89.0 141 46.8
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 8.7e-16 87.4 122 46.7
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.5e-15 86.7 139 40.3
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.9e-15 86.3 111 45.9
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 1.9e-15 86.3 77 62.3
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 2.5e-15 85.9 78 57.7
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 4.3e-15 85.1 103 46.6
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 4.3e-15 85.1 113 48.7
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.6e-15 84.7 114 48.2
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 7.3e-15 84.3 104 51.0
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 7.3e-15 84.3 117 49.6
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 9.6e-15 84.0 66 68.2
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.6e-15 84.0 66 68.2
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.3e-14 83.6 123 43.1
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.3e-14 83.6 105 48.6
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.6e-14 83.2 66 68.2
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.1e-14 82.8 94 54.3
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.8e-14 82.4 104 47.1
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.6e-14 82.0 79 53.2
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 4.8e-14 81.6 113 49.6
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.1e-13 80.5 133 39.8
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-13 80.5 124 43.5
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.8e-13 79.7 103 43.7
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.4e-13 79.3 119 44.5
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.1e-13 79.0 98 43.9
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 3.1e-13 79.0 91 46.2
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 6.9e-13 77.8 95 48.4
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-12 77.0 98 52.0
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.2e-12 77.0 78 50.0
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.2e-12 77.0 94 44.7
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.5e-12 76.6 75 54.7
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.5e-12 76.6 99 51.5
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.0e-12 76.3 104 45.2
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.0e-12 76.3 76 53.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 2.0e-12 76.3 86 46.5
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.6e-12 75.9 90 50.0
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 4.4e-12 75.1 70 57.1
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 9.9e-12 73.9 67 65.7
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.3e-11 73.6 124 40.3
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.7e-11 73.2 66 56.1
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.7e-11 73.2 67 64.2
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.7e-11 73.2 112 43.8
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.2e-11 72.8 72 54.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 2.2e-11 72.8 72 54.2
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.9e-11 71.6 74 50.0
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.9e-11 71.6 135 38.5
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 6.4e-11 71.2 104 42.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 8.4e-11 70.9 60 68.3
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.1e-10 70.5 65 55.4
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-10 69.7 115 43.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.9e-10 69.7 123 38.2
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 2.4e-10 69.3 60 68.3
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.4e-10 69.3 86 41.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.4e-10 69.3 67 56.7
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 3.2e-10 68.9 66 54.5
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 4.2e-10 68.6 101 41.6
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 5.4e-10 68.2 76 48.7
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.1e-10 67.8 114 42.1
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 9.3e-10 67.4 66 51.5
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.3e-10 67.4 112 42.9
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 9.3e-10 67.4 94 45.7
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.2e-09 67.0 66 54.5
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.7e-09 65.9 134 38.1
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.5e-09 65.5 60 65.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 6.0e-09 64.7 66 51.5
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 7.8e-09 64.3 54 64.8
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.0e-08 63.9 88 45.5
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.3e-08 63.5 105 41.0
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.3e-08 63.5 108 39.8
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.7e-08 63.2 86 43.0
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.0e-08 62.4 91 41.8
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 8.7e-08 60.8 99 44.4
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.5e-07 59.3 110 37.3
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.5e-07 59.3 88 38.6
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 2.5e-07 59.3 68 48.5
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 5.6e-07 58.2 66 45.5
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.3e-06 57.0 112 36.6
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.6e-06 56.6 58 51.7
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.6e-06 56.6 75 44.0
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 4.8e-06 55.1 88 42.0
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 8.1e-06 54.3 133 32.3


User provided reference genes

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