Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 6.6e-191 670.6 359 100.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 5.2e-119 431.8 370 68.6
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.8e-116 423.3 378 66.7
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 5.3e-116 421.8 376 67.0
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 5.3e-116 421.8 375 66.7
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 7.0e-116 421.4 376 66.8
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 1.6e-115 420.2 375 66.4
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 5.9e-115 418.3 365 66.6
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.3e-114 417.2 367 67.3
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 2.2e-114 416.4 366 67.5
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 6.5e-114 414.8 380 65.0
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.1e-113 414.1 365 64.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.9e-113 413.3 366 65.3
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.6e-112 409.1 364 67.3
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.7e-112 408.7 376 64.4
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 6.1e-112 408.3 375 64.5
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 8.0e-112 407.9 360 66.7
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 8.0e-112 407.9 369 64.8
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.4e-111 407.1 371 65.8
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.8e-111 406.8 341 70.1
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 8.8e-111 404.4 365 63.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.5e-110 403.7 328 71.3
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.3e-109 400.6 365 64.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.7e-109 400.2 416 59.1
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.2e-109 399.8 381 64.0
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 4.8e-109 398.7 369 63.1
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 4.8e-109 398.7 356 66.6
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.4e-108 396.4 372 62.6
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 3.1e-108 396.0 369 62.6
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 4.1e-108 395.6 370 63.5
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 4.1e-108 395.6 373 63.8
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 5.4e-108 395.2 368 64.4
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 5.4e-108 395.2 368 64.4
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 5.4e-108 395.2 365 64.7
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 1.2e-107 394.0 369 64.2
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.2e-107 394.0 351 67.0
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.2e-107 394.0 365 63.8
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-107 393.7 368 64.1
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.6e-107 393.7 372 63.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 1.6e-107 393.7 331 68.0
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.5e-107 392.5 376 63.3
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 3.5e-107 392.5 368 63.9
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 3.5e-107 392.5 339 67.8
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 4.5e-107 392.1 354 65.3
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 4.5e-107 392.1 370 59.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 7.7e-107 391.3 368 64.4
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 7.7e-107 391.3 372 63.7
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 7.7e-107 391.3 368 63.3
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 7.7e-107 391.3 368 63.6
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 7.7e-107 391.3 368 63.3
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 7.7e-107 391.3 368 63.6
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-106 390.6 368 63.9
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.7e-106 390.2 369 63.7
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.9e-106 389.4 336 67.6
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.9e-106 389.4 326 69.0
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 5.0e-106 388.7 368 63.6
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 5.0e-106 388.7 368 63.0
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 5.0e-106 388.7 368 63.6
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 5.0e-106 388.7 368 63.0
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 8.6e-106 387.9 358 63.4
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.1e-105 387.5 365 63.0
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.1e-105 387.5 369 62.3
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.1e-105 387.5 356 65.4
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.5e-105 387.1 367 63.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-105 386.3 370 63.2
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.5e-105 386.3 368 63.0
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.5e-105 386.3 370 63.2
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 3.3e-105 386.0 369 62.9
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 4.2e-105 385.6 353 64.3
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 4.2e-105 385.6 366 63.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.2e-105 385.6 365 65.2
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 4.2e-105 385.6 367 63.5
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 4.2e-105 385.6 366 62.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.5e-105 385.2 370 63.2
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 5.5e-105 385.2 355 64.5
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 7.2e-105 384.8 367 63.2
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.2e-105 384.8 369 63.4
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 7.2e-105 384.8 358 63.1
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 7.2e-105 384.8 375 61.9
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 9.5e-105 384.4 358 64.2
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.2e-104 384.0 371 62.5
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 3.6e-104 382.5 370 63.5
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 6.1e-104 381.7 327 67.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 6.1e-104 381.7 362 63.5
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 8.0e-104 381.3 374 60.2
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-103 380.6 367 61.9
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-103 380.2 367 62.7
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-103 379.4 333 68.5
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 3.0e-103 379.4 367 62.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.2e-103 378.6 326 67.5
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.8e-103 378.3 347 63.7
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.0e-102 376.7 338 64.2
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.0e-102 376.7 338 63.9
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 3.4e-102 375.9 364 62.4
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 4.4e-102 375.6 373 61.1
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 7.5e-102 374.8 371 60.9
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 9.8e-102 374.4 340 66.5
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.3e-101 374.0 371 59.8
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.2e-101 373.2 360 61.7
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 6.3e-101 371.7 369 61.8
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 8.3e-101 371.3 371 60.6
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-100 370.5 360 61.4
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.8e-100 370.2 326 64.7
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-100 370.2 364 62.4
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.2e-99 367.5 372 58.6
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 5.9e-99 365.2 319 66.5
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.3e-98 363.2 373 58.2
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.9e-97 360.1 336 64.0
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.3e-97 359.4 281 70.8
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 9.5e-97 357.8 328 59.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 2.1e-96 356.7 281 70.1
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.8e-96 356.3 281 70.1
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 6.8e-95 351.7 332 63.6
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.2e-94 350.9 328 62.5
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 4.9e-93 345.5 364 58.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 8.3e-93 344.7 240 78.3
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 7.8e-91 338.2 325 60.0
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 5.0e-90 335.5 332 60.8
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 6.6e-90 335.1 239 76.6
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.5e-86 323.9 202 80.2
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 7.8e-83 311.6 358 53.9
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 3.0e-82 309.7 324 57.1
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.6e-82 308.1 329 57.1
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 5.2e-79 298.9 317 59.9
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 7.8e-75 285.0 293 60.1
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 5.1e-74 282.3 369 52.0
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.1e-71 274.6 324 53.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 4.0e-71 272.7 390 46.2
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.7e-69 267.3 209 69.4
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 3.2e-68 263.1 270 57.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 2.1e-67 260.4 287 57.1
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.7e-67 260.0 263 55.1
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.6e-62 243.4 336 48.2
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 7.1e-60 235.3 338 47.3
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 9.6e-57 224.9 324 48.5
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 9.0e-55 218.4 208 57.7
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 7.9e-51 205.3 127 81.9
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 8.7e-50 201.8 231 51.1
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.8e-45 186.4 164 59.8
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 5.8e-38 162.5 163 57.1
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.2e-36 156.4 90 83.3
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 9.4e-28 128.6 128 55.5
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-24 118.2 78 76.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 5.5e-20 102.8 105 53.3
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-19 100.5 66 75.8
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 3.1e-15 87.0 156 41.0
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.2e-14 85.1 139 38.8
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.5e-14 84.7 266 33.5
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-12 77.8 59 64.4
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.7e-11 73.9 173 35.8
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 5.2e-10 69.7 49 67.3
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.6e-09 67.4 62 61.3
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 4.4e-09 66.6 90 44.4
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.3e-08 62.8 47 66.0
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.8e-07 61.2 69 50.7
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-07 59.7 69 49.3
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 7.0e-07 59.3 100 40.0
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 1.6e-06 58.2 78 41.0
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-06 57.4 38 73.7
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-06 56.6 43 65.1


User provided reference genes

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