Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.2e-249 865.1 424 100.0
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.4e-134 483.8 329 72.9
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 4.8e-132 475.3 329 72.6
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.2e-130 470.7 329 71.7
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.2e-130 470.7 327 71.3
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.6e-130 469.5 329 69.9
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 4.2e-128 462.2 336 69.0
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 6.1e-127 458.4 325 69.8
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.0e-126 456.1 328 68.9
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 2.6e-125 453.0 326 69.6
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 3.3e-125 452.6 325 71.1
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 9.7e-125 451.1 308 73.1
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 7.0e-123 444.9 329 68.4
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.6e-122 443.0 328 67.1
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 4.5e-122 442.2 317 69.4
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 4.5e-122 442.2 324 67.3
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 4.5e-122 442.2 315 68.6
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.0e-121 441.0 324 67.0
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 1.3e-121 440.7 320 70.6
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.3e-121 440.7 323 69.3
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.7e-121 440.3 293 73.0
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 5.0e-121 438.7 298 72.8
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 5.0e-121 438.7 338 65.1
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 5.0e-121 438.7 329 66.3
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 6.5e-121 438.3 318 68.6
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 1.9e-120 436.8 339 65.2
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 2.5e-120 436.4 372 61.3
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 4.2e-120 435.6 361 61.8
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.6e-119 433.7 321 67.9
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 3.6e-119 432.6 312 70.5
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 2.3e-118 429.9 287 72.1
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 3.0e-118 429.5 328 66.8
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 3.0e-118 429.5 327 65.1
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.5e-117 427.2 365 61.6
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.5e-117 427.2 324 67.9
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.0e-117 426.8 326 65.3
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 2.0e-117 426.8 301 71.8
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.0e-117 426.8 314 67.5
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 3.3e-117 426.0 325 66.8
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 5.7e-117 425.2 328 66.8
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 7.5e-117 424.9 345 64.6
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-116 424.1 319 68.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.3e-116 424.1 310 67.4
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.7e-116 423.7 394 57.6
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 2.8e-116 422.9 290 72.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.4e-115 420.6 315 66.3
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.4e-115 420.6 300 69.7
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.4e-115 419.9 312 69.2
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 3.1e-115 419.5 314 67.5
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 7.0e-115 418.3 330 64.8
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 7.0e-115 418.3 292 68.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 9.1e-115 417.9 305 66.9
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 9.1e-115 417.9 304 68.4
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.7e-114 416.4 330 63.6
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 4.5e-114 415.6 328 65.5
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 5.9e-114 415.2 294 69.4
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.3e-113 414.1 281 70.8
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 2.9e-113 412.9 323 64.4
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.9e-112 410.2 388 53.6
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.2e-112 409.5 370 58.6
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 4.2e-112 409.1 330 63.9
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 5.5e-112 408.7 271 72.3
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.2e-111 407.5 270 75.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 1.2e-111 407.5 269 74.3
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.7e-111 406.4 289 66.8
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.0e-110 402.9 306 66.3
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 8.8e-110 401.4 389 56.8
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.2e-109 401.0 313 64.5
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.5e-109 400.6 306 65.7
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 8.3e-108 394.8 316 60.8
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 1.1e-107 394.4 341 58.7
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.8e-107 393.7 275 66.9
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.4e-107 393.3 285 66.7
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 3.1e-107 392.9 274 68.2
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 5.4e-107 392.1 265 73.2
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 9.1e-107 391.3 337 58.5
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 2.7e-106 389.8 298 64.4
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 5.9e-106 388.7 272 68.4
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.0e-105 387.9 280 67.5
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 8.6e-105 384.8 273 68.1
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 2.5e-104 383.3 384 55.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 9.5e-104 381.3 339 58.1
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 2.8e-103 379.8 253 73.9
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.6e-103 379.4 321 57.6
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 4.7e-103 379.0 271 65.7
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 6.1e-103 378.6 261 68.2
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 8.0e-103 378.3 312 60.3
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 8.0e-103 378.3 312 60.3
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 8.0e-103 378.3 272 65.1
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.4e-102 377.5 273 65.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.4e-102 377.5 293 62.8
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.8e-102 377.1 318 59.7
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 2.3e-102 376.7 271 65.3
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 2.6e-101 373.2 250 72.0
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 2.6e-101 373.2 281 65.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 4.4e-101 372.5 316 59.2
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 7.5e-101 371.7 215 82.3
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.7e-100 370.5 238 72.7
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 5.0e-97 359.0 304 61.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.1e-96 357.8 297 59.9
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 8.0e-95 351.7 323 60.1
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 4.0e-94 349.4 237 70.0
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 5.8e-93 345.5 215 74.9
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 9.8e-93 344.7 264 61.4
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-92 344.4 264 61.4
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.4e-91 340.9 264 61.4
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 5.6e-88 328.9 301 57.8
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.7e-84 317.4 267 57.7
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 8.3e-84 315.1 183 83.6
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 4.3e-80 302.8 250 60.0
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.4e-78 297.7 190 72.1
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 2.6e-77 293.5 288 49.7
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 1.2e-69 268.1 206 58.7
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 3.9e-65 253.1 258 49.6
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.4e-62 244.6 233 49.8
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 4.6e-58 229.6 245 52.2
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 1.5e-56 224.6 269 47.6
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 9.9e-53 211.8 214 49.1
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.3e-49 201.4 124 76.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.5e-48 197.2 124 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 7.4e-40 169.1 164 50.6
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.1e-24 118.6 83 65.1
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.4e-22 111.7 70 77.1
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 8.5e-20 102.4 68 73.5
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.9e-19 101.3 160 38.1
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.7e-18 96.7 61 72.1
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.7e-18 96.7 61 72.1
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 2.2e-15 87.8 148 34.5
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.4e-14 84.3 217 29.5
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.3e-14 83.2 264 29.9
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 7.0e-14 82.8 78 56.4
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 9.1e-14 82.4 229 28.8
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 9.1e-14 82.4 221 30.8
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.2e-13 82.0 183 31.1
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 4.5e-13 80.1 184 29.9
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 4.5e-13 80.1 218 30.7
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 5.9e-13 79.7 213 29.1
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 7.7e-13 79.3 213 30.5
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 7.7e-13 79.3 221 30.8
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 7.7e-13 79.3 221 30.8
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 7.7e-13 79.3 209 29.2
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 1.0e-12 79.0 116 35.3
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.0e-12 79.0 215 27.9
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 1.3e-12 78.6 119 36.1
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 1.7e-12 78.2 246 28.5
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.9e-12 77.4 148 33.1
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 3.8e-12 77.0 188 31.4
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.8e-12 77.0 218 29.8
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 5.0e-12 76.6 116 37.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 5.0e-12 76.6 131 33.6
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 5.0e-12 76.6 144 31.2
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 6.5e-12 76.3 191 27.7
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 6.5e-12 76.3 184 29.3
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 6.5e-12 76.3 145 33.1
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.1e-11 75.5 143 32.9
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 1.9e-11 74.7 150 32.7
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.9e-11 74.7 214 29.0
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 1.9e-11 74.7 184 29.9
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.9e-11 74.7 345 24.9
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 3.2e-11 73.9 212 28.8
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 4.2e-11 73.6 183 28.4
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 4.2e-11 73.6 183 28.4
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 4.2e-11 73.6 210 29.0
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 5.5e-11 73.2 193 26.9
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.6e-10 71.6 193 29.0
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 2.1e-10 71.2 169 28.4
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 3.6e-10 70.5 123 32.5
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 4.7e-10 70.1 183 29.0
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 6.1e-10 69.7 215 28.8
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.4e-09 68.6 60 56.7
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.4e-09 68.6 142 31.0
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 1.4e-09 68.6 120 33.3
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 2.3e-09 67.8 209 28.2
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 6.7e-09 66.2 276 25.4
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 8.8e-09 65.9 126 33.3
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.1e-08 65.5 90 36.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.1e-08 65.5 239 28.5
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 4.8e-07 60.1 97 33.0
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.1e-06 58.9 48 54.2
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 3.1e-06 57.4 141 29.8
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 9.1e-06 55.8 53 47.2


User provided reference genes

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