Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 0.0e+00 1496.9 742 100.0
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 0.0e+00 1098.2 743 71.7
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 0.0e+00 1081.2 744 72.3
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 0.0e+00 1075.5 743 71.9
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 3.6e-311 1071.2 743 70.8
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 5.0e-310 1067.4 743 71.1
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 7.2e-309 1063.5 743 69.9
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 2.0e-306 1055.4 742 70.1
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.3e-305 1052.7 743 70.3
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 1.7e-305 1052.4 743 70.1
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.4e-304 1049.3 744 70.6
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.3e-302 1042.7 747 69.9
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.3e-302 1042.0 741 69.8
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 6.6e-302 1040.4 744 69.1
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 6.1e-300 1033.9 741 69.0
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 1.5e-298 1029.2 741 69.0
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.0e-298 1028.9 742 68.2
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 5.0e-294 1014.2 744 68.3
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.2e-292 1009.6 759 66.8
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 1.6e-292 1009.2 743 67.3
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 3.1e-291 1005.0 746 66.5
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 6.8e-291 1003.8 744 66.8
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 3.4e-290 1001.5 748 67.6
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 7.5e-290 1000.3 748 67.6
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 2.0e-287 992.3 745 66.6
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 6.2e-284 980.7 774 63.8
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 8.1e-284 980.3 743 65.3
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.5e-282 976.1 745 66.3
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 2.0e-282 975.7 745 65.0
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.6e-282 975.3 776 64.2
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.5e-282 973.8 778 64.3
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 3.7e-281 971.5 744 64.7
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 8.3e-281 970.3 779 63.9
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 4.1e-280 968.0 743 65.3
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 2.1e-279 965.7 745 65.4
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 5.6e-277 957.6 742 65.4
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 5.6e-277 957.6 769 64.0
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 7.3e-277 957.2 743 65.8
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 9.5e-277 956.8 676 71.2
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 4.7e-276 954.5 743 66.5
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 8.1e-276 953.7 743 66.6
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.1e-275 953.4 660 70.9
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.0e-274 949.1 736 64.4
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.0e-274 949.1 827 60.2
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 9.9e-274 946.8 744 63.6
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 9.9e-274 946.8 768 64.6
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 2.4e-272 942.2 739 65.1
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 1.2e-271 939.9 728 66.6
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 1.6e-271 939.5 659 70.3
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 2.1e-271 939.1 748 64.7
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 6.0e-271 937.6 744 63.7
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 7.8e-271 937.2 799 60.6
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 2.3e-270 935.6 744 63.4
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 2.3e-270 935.6 741 63.4
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 3.3e-269 931.8 744 63.8
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.4e-267 926.4 741 63.6
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.8e-267 926.0 747 63.5
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 2.4e-267 925.6 743 62.7
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 5.2e-267 924.5 748 63.5
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 9.0e-267 923.7 680 68.1
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 2.0e-266 922.5 744 61.4
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 2.6e-266 922.2 606 75.6
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 2.2e-265 919.1 741 62.5
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 2.2e-265 919.1 746 62.5
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.1e-264 916.8 670 67.5
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.4e-264 916.4 741 62.6
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 3.2e-264 915.2 744 62.9
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 9.3e-264 913.7 760 61.8
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 9.3e-264 913.7 744 63.0
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 2.7e-263 912.1 748 62.4
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 7.8e-263 910.6 765 61.6
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 3.9e-262 908.3 745 62.7
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.5e-261 905.6 743 61.5
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 1.6e-260 902.9 831 57.9
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 3.6e-260 901.7 746 62.7
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 3.6e-260 901.7 742 63.5
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 8.1e-260 900.6 750 62.3
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 5.8e-258 894.4 746 62.3
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 9.9e-258 893.6 747 62.0
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 6.4e-257 891.0 666 66.4
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 1.1e-256 890.2 742 62.0
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 1.1e-256 890.2 742 62.0
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 6.0e-255 884.4 745 61.9
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.3e-254 883.2 667 64.2
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 1.9e-253 879.4 750 61.6
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.8e-252 875.5 765 58.6
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 3.2e-248 862.1 726 61.3
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 2.8e-244 849.0 568 76.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.1e-243 847.0 762 58.0
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.8e-243 846.3 753 59.0
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 1.4e-240 836.6 749 57.3
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.9e-237 826.2 753 57.9
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 2.5e-237 825.9 760 56.2
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 1.6e-236 823.2 744 58.6
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 3.7e-236 822.0 663 63.0
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.2e-234 817.0 669 61.6
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 1.4e-232 810.1 741 57.8
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-227 792.0 743 56.1
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.0e-226 789.6 737 55.1
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.6e-223 780.0 814 52.3
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.3e-219 765.0 743 55.6
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 4.4e-213 745.3 926 47.2
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.3e-209 733.8 745 53.0
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 6.3e-204 714.9 623 59.6
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 2.0e-197 693.3 623 59.9
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.5e-189 667.2 746 49.2
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.8e-187 660.2 748 49.2
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 5.0e-177 625.5 563 57.4
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.6e-175 620.5 639 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.7e-172 610.5 775 45.9
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 6.6e-169 598.6 752 45.9
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 3.6e-167 592.8 658 50.8
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 4.7e-167 592.4 523 57.7
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 1.7e-156 557.4 628 48.6
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 9.2e-155 551.6 607 49.6
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 2.5e-152 543.5 562 53.0
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 6.9e-134 482.3 393 61.8
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.5e-115 420.6 401 53.1
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 3.0e-89 334.0 626 35.3
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.7e-87 327.0 355 51.5
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 4.1e-78 297.0 699 31.3
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.6e-77 295.0 644 33.7
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 5.8e-64 250.0 374 39.0
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.1e-57 229.2 227 50.7
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.1e-57 229.2 227 50.7
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 1.9e-54 218.4 187 55.1
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 3.3e-51 207.6 161 68.3
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 9.5e-51 206.1 146 67.8
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 3.1e-49 201.1 546 30.4
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 5.8e-48 196.8 160 63.8
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 6.6e-36 156.8 102 78.4
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 9.6e-35 152.9 77 93.5
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 4.8e-34 150.6 77 92.2
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 6.9e-33 146.7 77 85.7
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 6.4e-23 113.6 56 94.6
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 2.7e-21 108.2 99 49.5
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 2.3e-20 105.1 176 40.3
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 2.0e-16 92.0 77 61.0
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 4.5e-16 90.9 69 62.3
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 1.7e-15 89.0 190 36.8
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 8.4e-15 86.7 62 64.5
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 1.1e-14 86.3 50 76.0
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.5e-11 75.9 66 59.1
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 4.3e-11 74.3 66 59.1
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 5.3e-09 67.4 56 60.7
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 7.2e-06 57.0 60 53.3
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 7.2e-06 57.0 60 53.3


User provided reference genes

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