Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 5.4e-34 147.1 76 100.0
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 2.2e-19 98.6 74 66.2
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 3.7e-19 97.8 73 65.8
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.1e-17 92.0 75 64.0
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 2.7e-17 91.7 73 65.8
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 4.6e-17 90.9 75 64.0
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 7.8e-17 90.1 74 62.2
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 1.3e-16 89.4 74 60.8
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 1.7e-16 89.0 74 62.2
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 3.9e-16 87.8 59 74.6
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 5.1e-16 87.4 74 60.8
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 8.6e-16 86.7 73 60.3
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 1.1e-15 86.3 63 68.3
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 1.5e-15 85.9 74 59.5
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.9e-15 85.5 75 58.7
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.9e-15 85.5 75 58.7
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.9e-15 85.5 52 78.8
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 2.5e-15 85.1 63 63.5
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 2.5e-15 85.1 75 58.7
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 4.3e-15 84.3 73 56.2
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 5.6e-15 84.0 72 59.7
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 5.6e-15 84.0 73 58.9
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 7.3e-15 83.6 73 58.9
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 7.3e-15 83.6 64 64.1
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 7.3e-15 83.6 75 58.7
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.2e-14 82.8 73 63.0
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 1.6e-14 82.4 71 57.7
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 2.1e-14 82.0 74 59.5
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 2.8e-14 81.6 74 56.8
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 2.8e-14 81.6 64 60.9
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 3.6e-14 81.3 73 56.2
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 6.2e-14 80.5 74 56.8
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 1.1e-13 79.7 75 60.0
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 1.4e-13 79.3 75 58.7
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 1.8e-13 79.0 62 62.9
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 1.8e-13 79.0 62 62.9
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 2.4e-13 78.6 74 55.4
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 5.2e-13 77.4 62 61.3
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 5.2e-13 77.4 62 61.3
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 5.2e-13 77.4 59 61.0
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 5.2e-13 77.4 74 54.1
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 1.2e-12 76.3 74 56.8
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 1.5e-12 75.9 79 55.7
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 1.5e-12 75.9 73 56.2
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 2.0e-12 75.5 70 60.0
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 2.6e-12 75.1 69 56.5
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 4.4e-12 74.3 70 55.7
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 5.8e-12 73.9 76 59.2
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 5.8e-12 73.9 73 52.1
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 2.2e-11 72.0 71 53.5
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.2e-11 72.0 65 56.9
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 2.9e-11 71.6 51 66.7
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 3.8e-11 71.2 71 50.7
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 3.8e-11 71.2 72 51.4
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 3.8e-11 71.2 73 52.1
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 6.4e-11 70.5 64 57.8
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 6.4e-11 70.5 51 64.7
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 8.4e-11 70.1 57 63.2
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 1.1e-10 69.7 66 53.0
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 1.4e-10 69.3 63 57.1
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 1.9e-10 68.9 46 65.2
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 2.4e-10 68.6 58 53.4
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 3.2e-10 68.2 67 53.7
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 3.2e-10 68.2 75 49.3
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 3.2e-10 68.2 60 58.3
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 3.2e-10 68.2 60 58.3
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 5.4e-10 67.4 73 52.1
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 7.1e-10 67.0 76 47.4
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 9.2e-10 66.6 75 49.3
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 9.2e-10 66.6 74 47.3
PSO170G3772 Papaver somniferum HOM05D007513 ORTHO05D008148 1.6e-09 65.9 49 67.3
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 2.7e-09 65.1 76 46.1
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 2.7e-09 65.1 76 46.1
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 2.7e-09 65.1 58 51.7
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 2.7e-09 65.1 76 46.1
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 2.7e-09 65.1 74 48.6
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 3.5e-09 64.7 76 44.7
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 3.5e-09 64.7 75 46.7
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 3.5e-09 64.7 66 50.0
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 7.8e-09 63.5 66 47.0
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 1.7e-08 62.4 66 50.0
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 2.3e-08 62.0 53 52.8
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 3.0e-08 61.6 58 48.3
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 6.6e-08 60.5 51 60.8
Gohir.A02G152300 Gossypium hirsutum HOM05D045493 ORTHO05D008148 6.6e-08 60.5 113 35.4
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 6.6e-08 60.5 65 50.8
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 1.1e-07 59.7 40 70.0
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 3.3e-07 58.2 67 46.3
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 4.3e-07 57.8 66 43.9
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 7.3e-07 57.0 49 57.1
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 7.3e-07 57.0 63 50.8
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 1.2e-06 56.2 70 42.9
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 1.2e-06 56.2 67 44.8
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 2.1e-06 55.5 43 62.8
arahy.Tifrunner.gnm1.ann1.NLBN4J Arachis hypogaea HOM05D007513 ORTHO05D008148 6.2e-06 53.9 72 44.4
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 6.2e-06 53.9 67 41.8


User provided reference genes

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