Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023448001 Vitis vinifera HOM05D003473 ORTHO05D003872 1.3e-69 266.2 122 100.0
GSVIVG01023451001 Vitis vinifera HOM05D003473 ORTHO05D003872 2.9e-53 211.8 101 93.1
Manes.08G140000 Manihot esculenta HOM05D003473 ORTHO05D003872 6.6e-50 200.7 101 85.1
TWI36G0550 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 1.1e-49 199.9 101 84.2
Cpa.g.sc306.6 Carica papaya HOM05D003473 ORTHO05D003872 2.5e-49 198.7 101 83.2
Potri.019G019800 Populus trichocarpa HOM05D003473 ORTHO05D003872 5.6e-49 197.6 101 83.2
QL03p029857 Quercus lobata HOM05D003473 ORTHO05D003872 7.3e-49 197.2 101 82.2
Sabra13G0043500 Salix brachista HOM05D003473 ORTHO05D003872 7.3e-49 197.2 101 82.2
Atru.chr2.998 Acer truncatum HOM05D003473 ORTHO05D003872 2.1e-48 195.7 101 83.2
Potri.013G047600 Populus trichocarpa HOM05D003473 ORTHO05D003872 2.1e-48 195.7 101 82.2
ClCG11G010530 Citrullus lanatus HOM05D003473 ORTHO05D003872 1.1e-47 193.4 101 80.2
Sabra19G0032100 Salix brachista HOM05D003473 ORTHO05D003872 3.1e-47 191.8 117 73.5
Dinv25278 Davidia involucrata HOM05D003473 ORTHO05D003872 5.2e-47 191.0 101 79.2
Thecc.05G270100 Theobroma cacao HOM05D003473 ORTHO05D003872 5.2e-47 191.0 101 80.2
CiPaw.07G073400 Carya illinoinensis HOM05D003473 ORTHO05D003872 6.8e-47 190.7 103 77.7
CsaV3_2G009860 Cucumis sativus L. HOM05D003473 ORTHO05D003872 6.8e-47 190.7 99 82.8
MD04G1231000 Malus domestica HOM05D003473 ORTHO05D003872 6.8e-47 190.7 100 82.0
EL10Ac4g08995 Beta vulgaris HOM05D003473 ORTHO05D003872 2.0e-46 189.1 97 82.5
Sed0013546 Sechium edule HOM05D003473 ORTHO05D003872 2.0e-46 189.1 99 81.8
Haze_04416 Corylus avellana HOM05D003473 ORTHO05D003872 3.4e-46 188.3 100 82.0
Nitab4.5_0001913g0170 Nicotiana tabacum HOM05D003473 ORTHO05D003872 3.4e-46 188.3 101 79.2
Nitab4.5_0011129g0030 Nicotiana tabacum HOM05D003473 ORTHO05D003872 3.4e-46 188.3 101 79.2
TWI56G1190 Tripterygium wilfordii HOM05D003473 ORTHO05D003872 3.4e-46 188.3 99 80.8
MELO3C008699.2 Cucumis melo HOM05D003473 ORTHO05D003872 4.4e-46 188.0 98 81.6
AUR62004830 Chenopodium quinoa HOM05D003473 ORTHO05D003872 5.8e-46 187.6 97 82.5
Ciclev10019419m.g Citrus clementina HOM05D003473 ORTHO05D003872 5.8e-46 187.6 97 84.5
Hma1.2p1_1007F.1_g247110 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 5.8e-46 187.6 101 76.2
Glyma.03G250300 Glycine max HOM05D003473 ORTHO05D003872 7.5e-46 187.2 101 78.2
Prupe.6G350700 Prunus persica HOM05D003473 ORTHO05D003872 7.5e-46 187.2 94 86.2
Sc20g0000670 Simmondsia chinensis HOM05D003473 ORTHO05D003872 7.5e-46 187.2 101 79.2
MD12G1249300 Malus domestica HOM05D003473 ORTHO05D003872 9.8e-46 186.8 100 80.0
Oeu014528.1 Olea europaea HOM05D003473 ORTHO05D003872 9.8e-46 186.8 101 79.2
Oeu014529.1 Olea europaea HOM05D003473 ORTHO05D003872 9.8e-46 186.8 101 79.2
Cfa006361 Carpinus fangiana HOM05D003473 ORTHO05D003872 1.3e-45 186.4 97 83.5
TPR.G6958 Trifolium pratense HOM05D003473 ORTHO05D003872 1.3e-45 186.4 126 67.5
arahy.Tifrunner.gnm1.ann1.K8P0T6 Arachis hypogaea HOM05D003473 ORTHO05D003872 1.7e-45 186.0 100 80.0
Cc02_g08740 Coffea canephora HOM05D003473 ORTHO05D003872 1.7e-45 186.0 100 81.0
ECA238G4809 Erigeron canadensis HOM05D003473 ORTHO05D003872 1.7e-45 186.0 99 80.8
PGSC0003DMG400028063 Solanum tuberosum HOM05D003473 ORTHO05D003872 1.7e-45 186.0 101 77.2
Lsat_1_v5_gn_2_108280 Lactuca sativa HOM05D003473 ORTHO05D003872 2.2e-45 185.7 99 80.8
AUR62040917 Chenopodium quinoa HOM05D003473 ORTHO05D003872 3.7e-45 184.9 97 79.4
Dinv15516 Davidia involucrata HOM05D003473 ORTHO05D003872 3.7e-45 184.9 101 77.2
Actinidia38934 Actinidia chinensis HOM05D003473 ORTHO05D003872 4.9e-45 184.5 101 78.2
Lj2C44G25 Lonicera japonica HOM05D003473 ORTHO05D003872 6.4e-45 184.1 101 76.2
Migut.F01540 Erythranthe guttata HOM05D003473 ORTHO05D003872 8.3e-45 183.7 101 76.2
FAN05G0941 Fragaria x ananassa HOM05D003473 ORTHO05D003872 8.3e-45 183.7 99 80.8
FAN05G2419 Fragaria x ananassa HOM05D003473 ORTHO05D003872 8.3e-45 183.7 99 80.8
TPR.G22327 Trifolium pratense HOM05D003473 ORTHO05D003872 8.3e-45 183.7 97 80.4
SalBow6G1341 Salvia bowleyana HOM05D003473 ORTHO05D003872 1.1e-44 183.3 101 75.2
Peaxi162Scf00718g00014 Petunia axillaris HOM05D003473 ORTHO05D003872 1.4e-44 183.0 101 76.2
RcHm_v2.0_Chr3g0449501 Rosa chinensis HOM05D003473 ORTHO05D003872 1.4e-44 183.0 99 79.8
Lj5g0017612 Lotus japonicus HOM05D003473 ORTHO05D003872 1.9e-44 182.6 98 80.6
Lalb_Chr02g0149051 Lupinus albus HOM05D003473 ORTHO05D003872 1.9e-44 182.6 101 77.2
Eucgr.B02153 Eucalyptus grandis HOM05D003473 ORTHO05D003872 2.4e-44 182.2 101 76.2
Lalb_Chr06g0168251 Lupinus albus HOM05D003473 ORTHO05D003872 2.4e-44 182.2 101 76.2
Psat3g006840 Pisum sativum HOM05D003473 ORTHO05D003872 2.4e-44 182.2 123 68.3
MSTRG.8227 Avicennia marina HOM05D003473 ORTHO05D003872 4.1e-44 181.4 101 75.2
TAR362G0719 Trochodendron aralioides HOM05D003473 ORTHO05D003872 4.1e-44 181.4 99 75.8
Psat6g143640 Pisum sativum HOM05D003473 ORTHO05D003872 5.4e-44 181.0 119 70.6
HanXRQChr14g0454231 Helianthus annuus HOM05D003473 ORTHO05D003872 7.1e-44 180.6 99 77.8
CAN.G24.3 Capsicum annuum HOM05D003473 ORTHO05D003872 9.2e-44 180.3 101 76.2
Eucgr.B02152 Eucalyptus grandis HOM05D003473 ORTHO05D003872 9.2e-44 180.3 98 79.6
Glyma.10G165600 Glycine max HOM05D003473 ORTHO05D003872 1.2e-43 179.9 101 76.2
Ca_10021_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 1.6e-43 179.5 97 78.4
Ca_29585_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 1.6e-43 179.5 97 78.4
CANSAT54G3011 Cannabis sativa HOM05D003473 ORTHO05D003872 2.1e-43 179.1 97 79.4
Duzib177G0657 Durio zibethinus HOM05D003473 ORTHO05D003872 2.1e-43 179.1 99 77.8
Eucgr.B02425 Eucalyptus grandis HOM05D003473 ORTHO05D003872 2.1e-43 179.1 98 78.6
FvH4_6g01760 Fragaria vesca HOM05D003473 ORTHO05D003872 2.7e-43 178.7 99 78.8
FAN14G1733 Fragaria x ananassa HOM05D003473 ORTHO05D003872 2.7e-43 178.7 99 78.8
FAN14G5108 Fragaria x ananassa HOM05D003473 ORTHO05D003872 2.7e-43 178.7 99 78.8
Glyma.20G223600 Glycine max HOM05D003473 ORTHO05D003872 2.7e-43 178.7 98 77.6
Nn1g02856 Nelumbo nucifera HOM05D003473 ORTHO05D003872 2.7e-43 178.7 96 81.2
Medtr7g115570 Medicago truncatula HOM05D003473 ORTHO05D003872 6.0e-43 177.6 94 79.8
Duzib128G0977 Durio zibethinus HOM05D003473 ORTHO05D003872 7.8e-43 177.2 100 75.0
FAN09G4673 Fragaria x ananassa HOM05D003473 ORTHO05D003872 7.8e-43 177.2 99 77.8
MBI07_g22622_MAGBIO Magnolia biondii HOM05D003473 ORTHO05D003872 7.8e-43 177.2 116 71.6
PGR142G0316 Punica granatum HOM05D003473 ORTHO05D003872 1.0e-42 176.8 95 80.0
SGA_v2.0_scaffold2G01010 Striga asiatica HOM05D003473 ORTHO05D003872 1.0e-42 176.8 93 77.4
Gohir.A11G246500 Gossypium hirsutum HOM05D003473 ORTHO05D003872 1.3e-42 176.4 100 74.0
Gorai.007G275200 Gossypium raimondii HOM05D003473 ORTHO05D003872 2.3e-42 175.6 100 73.0
VMungo0720G0613 Vigna mungo HOM05D003473 ORTHO05D003872 2.3e-42 175.6 101 74.3
arahy.Tifrunner.gnm1.ann1.F06EBP Arachis hypogaea HOM05D003473 ORTHO05D003872 3.9e-42 174.9 97 77.3
arahy.Tifrunner.gnm1.ann1.T51LW4 Arachis hypogaea HOM05D003473 ORTHO05D003872 3.9e-42 174.9 97 77.3
Medtr1g080320 Medicago truncatula HOM05D003473 ORTHO05D003872 8.6e-42 173.7 95 77.9
Phvul.L001660 Phaseolus vulgaris HOM05D003473 ORTHO05D003872 1.5e-41 172.9 101 73.3
MSTRG.314 Avicennia marina HOM05D003473 ORTHO05D003872 1.9e-41 172.6 101 75.2
DCAR_030022 Daucus carota HOM05D003473 ORTHO05D003872 2.5e-41 172.2 89 82.0
Gohir.D11G256800 Gossypium hirsutum HOM05D003473 ORTHO05D003872 5.6e-41 171.0 100 71.0
vmacro10372 Vaccinium macrocarpon HOM05D003473 ORTHO05D003872 7.3e-41 170.6 103 74.8
PSO017G4386 Papaver somniferum HOM05D003473 ORTHO05D003872 1.2e-40 169.9 92 77.2
Aa31LG11G8510 Aethionema arabicum HOM05D003473 ORTHO05D003872 1.6e-40 169.5 92 77.2
Ca_09457_v3 Cicer arietinum L. HOM05D003473 ORTHO05D003872 1.6e-40 169.5 95 75.8
unitig_749.g14017 Utricularia gibba HOM05D003473 ORTHO05D003872 1.6e-40 169.5 97 71.1
Aqoxy2G03708 Aquilegia oxysepala HOM05D003473 ORTHO05D003872 2.8e-40 168.7 94 74.5
Sopen06g012690 Solanum pennellii HOM05D003473 ORTHO05D003872 3.6e-40 168.3 90 77.8
PSO063G4417 Papaver somniferum HOM05D003473 ORTHO05D003872 4.7e-40 167.9 92 77.2
Solyc06g036640.4 Solanum lycopersicum HOM05D003473 ORTHO05D003872 8.1e-40 167.2 90 77.8
COL.COLO4_15495 Corchorus olitorius HOM05D003473 ORTHO05D003872 1.4e-39 166.4 94 76.6
DCAR_030978 Daucus carota HOM05D003473 ORTHO05D003872 1.8e-39 166.0 89 80.9
HPP92_020845 Vanilla planifolia HOM05D003473 ORTHO05D003872 8.9e-39 163.7 95 69.5
Os02g0809500 Oryza sativa ssp. japonica HOM05D003473 ORTHO05D003872 1.2e-38 163.3 101 68.3
THA.LOC104820771 Tarenaya hassleriana HOM05D003473 ORTHO05D003872 5.8e-38 161.0 97 70.1
A06p38150 Brassica napus HOM05D003473 ORTHO05D003872 1.7e-37 159.5 93 72.0
BraA06t26728Z Brassica rapa HOM05D003473 ORTHO05D003872 1.7e-37 159.5 93 72.0
BcaNung02116 Brassica carinata HOM05D003473 ORTHO05D003872 2.2e-37 159.1 93 72.0
C07p40060 Brassica napus HOM05D003473 ORTHO05D003872 2.2e-37 159.1 93 72.0
BolC7t44541H Brassica oleracea HOM05D003473 ORTHO05D003872 2.2e-37 159.1 93 72.0
BcaC06g30691 Brassica carinata HOM05D003473 ORTHO05D003872 2.9e-37 158.7 93 71.0
CDE08G1169 Ceratophyllum demersum HOM05D003473 ORTHO05D003872 2.9e-37 158.7 98 68.4
CSS0019381 Camellia sinensis var. sinensis HOM05D003473 ORTHO05D003872 1.1e-36 156.8 101 70.3
C09p05430 Brassica napus HOM05D003473 ORTHO05D003872 1.4e-36 156.4 93 71.0
ATR0736G092 Amborella trichopoda HOM05D003473 ORTHO05D003872 1.9e-36 156.0 102 65.7
Thhalv10003947m.g Eutrema salsugineum HOM05D003473 ORTHO05D003872 2.4e-36 155.6 87 74.7
CARHR185420 Cardamine hirsuta HOM05D003473 ORTHO05D003872 4.1e-36 154.8 87 73.6
BcaC04g23717 Brassica carinata HOM05D003473 ORTHO05D003872 7.1e-36 154.1 89 71.9
BolC9t53472H Brassica oleracea HOM05D003473 ORTHO05D003872 7.1e-36 154.1 89 71.9
Carub.0006s2613 Capsella rubella HOM05D003473 ORTHO05D003872 9.2e-36 153.7 93 72.0
Hma1.2p1_1007F.1_g247120 Hydrangea macrophylla HOM05D003473 ORTHO05D003872 1.2e-35 153.3 101 64.4
AL6G40940 Arabidopsis lyrata HOM05D003473 ORTHO05D003872 1.6e-35 152.9 87 73.6
A09p05020 Brassica napus HOM05D003473 ORTHO05D003872 1.6e-35 152.9 89 71.9
BraA09t36141Z Brassica rapa HOM05D003473 ORTHO05D003872 1.6e-35 152.9 89 71.9
Aa31LG5G14900 Aethionema arabicum HOM05D003473 ORTHO05D003872 1.0e-34 150.2 89 70.8
Sp2g19990 Schrenkiella parvula HOM05D003473 ORTHO05D003872 1.3e-34 149.8 89 69.7
Carub.0007s3766 Capsella rubella HOM05D003473 ORTHO05D003872 1.1e-33 146.7 89 70.8
AT5G28910 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 4.3e-33 144.8 82 75.6
AT5G28960 Arabidopsis thaliana HOM05D003473 ORTHO05D003872 5.2e-31 137.9 89 66.3
Lj3g0009325 Lotus japonicus HOM05D003473 ORTHO05D003872 8.9e-31 137.1 81 71.6
BcaB04g19636 Brassica carinata HOM05D003473 ORTHO05D003872 7.6e-30 134.0 89 65.2
Carub.0006s2615 Capsella rubella HOM05D003473 ORTHO05D003872 2.2e-29 132.5 89 61.8
Carub.0006s2614 Capsella rubella HOM05D003473 ORTHO05D003872 1.1e-28 130.2 89 60.7
DCAR_030014 Daucus carota HOM05D003473 ORTHO05D003872 2.4e-28 129.0 77 74.0
SMO351G0042 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 7.1e-28 127.5 103 49.5
CBR_g57532 Chara braunii HOM05D003473 ORTHO05D003872 4.6e-27 124.8 99 54.5
AagrBONN_evm.TU.Sc2ySwM_228.1748 Anthoceros agrestis HOM05D003473 ORTHO05D003872 1.7e-26 122.9 96 54.2
Carub.0048s0001 Capsella rubella HOM05D003473 ORTHO05D003872 2.3e-26 122.5 86 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2742 Anthoceros agrestis HOM05D003473 ORTHO05D003872 3.3e-25 118.6 96 49.0
CBR_g34948 Chara braunii HOM05D003473 ORTHO05D003872 2.8e-24 115.5 92 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1715 Anthoceros agrestis HOM05D003473 ORTHO05D003872 3.6e-24 115.2 93 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2023 Anthoceros agrestis HOM05D003473 ORTHO05D003872 6.2e-24 114.4 88 54.5
CBR_g48364 Chara braunii HOM05D003473 ORTHO05D003872 3.1e-23 112.1 93 52.7
AagrBONN_evm.TU.Sc2ySwM_228.1714 Anthoceros agrestis HOM05D003473 ORTHO05D003872 4.0e-23 111.7 96 51.0
CBR_g23900 Chara braunii HOM05D003473 ORTHO05D003872 1.5e-22 109.8 91 56.0
SMO351G0391 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 4.4e-22 108.2 82 53.7
CBR_g48367 Chara braunii HOM05D003473 ORTHO05D003872 9.9e-22 107.1 91 54.9
CBR_g1013 Chara braunii HOM05D003473 ORTHO05D003872 1.9e-20 102.8 92 51.1
SGA_v2.0_scaffold26G11350 Striga asiatica HOM05D003473 ORTHO05D003872 5.4e-20 101.3 61 73.8
CBR_g40386 Chara braunii HOM05D003473 ORTHO05D003872 7.1e-20 100.9 99 44.4
SMO116G0126 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 3.9e-18 95.1 95 48.4
FAN02G1417 Fragaria x ananassa HOM05D003473 ORTHO05D003872 8.7e-18 94.0 46 87.0
SMO145G0097 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 8.7e-18 94.0 99 44.4
SMO347G0181 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.1e-17 93.6 91 45.1
SMO232G0138 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.6e-17 91.3 93 47.3
SMO241G0001 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.6e-17 91.3 94 45.7
SMO241G0018 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 9.6e-17 90.5 92 46.7
SMO241G0005 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 3.6e-16 88.6 87 44.8
SMO232G0001 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 4.8e-16 88.2 102 39.2
SMO232G0037 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.1e-15 87.0 89 44.9
SMO241G0019 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 2.4e-15 85.9 85 47.1
SMO232G0128 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 6.9e-15 84.3 89 42.7
SMO241G0014 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.2e-14 83.6 89 41.6
SGA_v2.0_scaffold158G37446 Striga asiatica HOM05D003473 ORTHO05D003872 2.0e-14 82.8 48 75.0
SMO235G0055 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.2e-11 73.6 72 44.4
SMO232G0114 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 7.4e-09 64.3 86 38.4
SEGI_32914 Sequoiadendron giganteum HOM05D003473 ORTHO05D003872 6.2e-08 61.2 34 67.6
HPP92_028131 Vanilla planifolia HOM05D003473 ORTHO05D003872 9.0e-07 57.4 71 46.5


User provided reference genes

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