Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.5e-141 506.1 250 100.0
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.6e-127 459.5 250 90.4
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 8.0e-127 457.2 250 89.6
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 2.3e-126 455.7 250 88.4
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 5.2e-126 454.5 250 89.6
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.2e-125 453.4 250 88.8
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.0e-125 452.6 243 90.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.6e-125 452.2 248 89.5
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.6e-125 452.2 250 86.8
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 3.4e-125 451.8 250 87.6
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 3.4e-125 451.8 250 89.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 7.5e-125 450.7 250 88.8
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.3e-124 449.9 250 88.8
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.3e-124 449.9 250 87.6
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.7e-124 449.5 250 87.6
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 3.7e-124 448.4 250 86.4
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 3.7e-124 448.4 251 88.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 8.3e-124 447.2 250 87.2
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 8.3e-124 447.2 250 87.2
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 8.3e-124 447.2 250 88.8
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.4e-123 446.4 250 86.8
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.8e-123 446.0 250 87.6
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.8e-123 446.0 250 88.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.4e-123 445.7 250 86.8
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 3.1e-123 445.3 250 87.6
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.1e-123 444.9 250 86.8
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 5.4e-123 444.5 250 87.2
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 9.2e-123 443.7 250 86.8
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.7e-122 442.2 250 85.2
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 4.5e-122 441.4 247 87.0
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 7.7e-122 440.7 251 85.7
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.0e-121 440.3 247 87.9
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.3e-121 439.9 250 86.0
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 1.7e-121 439.5 250 84.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.7e-121 439.5 245 87.8
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.3e-121 439.1 250 86.8
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.9e-121 438.7 250 84.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 2.9e-121 438.7 245 85.7
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 3.8e-121 438.3 251 85.7
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 5.0e-121 438.0 251 84.5
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 6.6e-121 437.6 250 85.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.6e-121 437.2 250 84.4
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 8.6e-121 437.2 249 86.7
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 8.6e-121 437.2 242 87.2
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.1e-120 436.8 250 85.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.5e-120 436.4 250 84.4
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.9e-120 436.0 250 84.0
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.5e-120 435.6 250 83.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 3.3e-120 435.3 250 84.4
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.2e-119 433.3 250 84.4
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.2e-119 433.3 250 84.4
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.2e-119 433.3 250 83.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.6e-119 433.0 250 84.0
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 3.6e-119 431.8 250 84.0
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 8.0e-119 430.6 250 84.0
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-118 430.3 263 80.6
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.8e-118 429.5 250 83.6
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.3e-118 429.1 250 83.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 3.0e-118 428.7 250 84.4
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 6.8e-118 427.6 248 83.9
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.2e-117 426.8 250 82.8
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.5e-117 426.4 224 91.5
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.5e-117 426.4 248 82.7
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 2.6e-117 425.6 248 82.7
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 2.6e-117 425.6 250 82.8
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.4e-117 425.2 248 81.5
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 3.4e-117 425.2 247 82.6
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 4.4e-117 424.9 250 82.4
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 5.7e-117 424.5 248 83.5
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 5.7e-117 424.5 250 82.0
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.7e-117 424.5 263 79.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 5.7e-117 424.5 249 82.3
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 9.8e-117 423.7 250 82.8
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 9.8e-117 423.7 250 80.0
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 9.8e-117 423.7 248 81.9
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 1.7e-116 422.9 250 85.6
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 2.2e-116 422.5 242 84.7
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 2.9e-116 422.2 247 82.2
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.7e-116 421.8 250 82.4
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.1e-115 420.2 231 87.0
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.4e-115 419.9 250 81.2
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.4e-115 419.9 250 81.2
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.4e-115 419.9 249 81.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.8e-115 419.5 248 80.6
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 2.4e-115 419.1 250 81.6
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.4e-115 419.1 249 80.7
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.1e-115 418.3 241 85.1
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 5.4e-115 417.9 245 82.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.0e-113 413.7 288 74.7
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.3e-113 412.5 245 81.2
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.5e-112 409.8 287 71.4
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.6e-111 406.4 241 83.4
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.6e-111 406.4 241 83.4
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 6.8e-110 401.0 250 81.2
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 3.4e-109 398.7 250 79.2
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 5.8e-109 397.9 244 77.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 5.8e-109 397.9 237 84.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.3e-108 396.7 250 75.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.2e-107 392.1 250 77.2
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.9e-104 382.9 251 74.1
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 3.1e-102 375.6 250 76.4
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 3.1e-102 375.6 253 70.8
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.7e-100 368.6 258 70.2
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.1e-95 352.8 242 70.7
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.7e-89 333.2 198 81.3
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-81 307.4 236 69.9
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 6.6e-81 304.7 246 61.4
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-79 300.4 229 68.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 6.2e-79 298.1 251 65.7
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 4.0e-78 295.4 247 62.8
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.2e-77 293.9 248 61.7
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 9.9e-69 264.2 149 81.9
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 9.3e-67 257.7 244 54.9
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 2.1e-66 256.5 138 89.9
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 3.5e-66 255.8 198 63.6
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.3e-65 253.8 137 87.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.0e-61 240.0 209 56.5
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 7.9e-58 228.0 127 84.3
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 2.4e-54 216.5 198 53.5
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.6e-45 186.4 138 71.0
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-34 148.3 162 48.1
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.0e-33 147.9 109 70.6
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.6e-29 134.0 89 70.8
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.2e-24 117.9 73 79.5
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.2e-21 107.8 78 66.7
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.6e-18 97.4 61 77.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.8e-15 86.7 131 47.3
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 2.7e-13 80.1 199 29.1
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.5e-12 75.5 48 77.1
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.9e-11 73.9 48 75.0
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-11 73.9 48 75.0
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.9e-11 73.9 120 45.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 2.1e-10 70.5 51 68.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 1.8e-09 67.4 50 70.0
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-09 65.9 41 75.6
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-09 65.9 41 75.6
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.8e-09 65.5 49 69.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.0e-08 63.9 41 73.2
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 4.4e-08 62.8 54 66.7
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 7.5e-08 62.0 164 28.7
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 2.8e-07 60.1 60 60.0
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 2.8e-07 60.1 167 31.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 1.1e-06 58.2 165 29.7


User provided reference genes

Program Settings