Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 2.4e-59 231.9 108 100.0
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 3.7e-44 181.4 108 79.6
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 8.2e-44 180.3 105 74.3
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 5.3e-43 177.6 104 72.1
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 2.6e-42 175.3 108 74.1
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 3.4e-42 174.9 101 74.3
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 3.4e-42 174.9 99 76.8
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 3.4e-42 174.9 108 75.0
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 5.8e-42 174.1 96 79.2
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 5.8e-42 174.1 103 72.8
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 7.6e-42 173.7 106 71.7
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 7.6e-42 173.7 95 80.0
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 1.0e-41 173.3 106 75.5
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 2.9e-41 171.8 105 71.4
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 1.1e-40 169.9 123 63.4
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.4e-40 169.5 108 73.1
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.4e-40 169.5 105 68.6
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 3.2e-40 168.3 95 75.8
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 1.6e-39 166.0 95 75.8
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 2.1e-39 165.6 102 69.6
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 2.1e-39 165.6 101 72.3
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 7.9e-39 163.7 94 72.3
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 1.0e-38 163.3 98 72.4
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 1.3e-38 162.9 94 76.6
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 3.9e-38 161.4 96 77.1
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 5.1e-38 161.0 103 68.9
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 8.7e-38 160.2 108 68.5
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 3.3e-37 158.3 98 68.4
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 4.3e-37 157.9 108 64.8
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 7.4e-37 157.1 103 68.0
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 9.7e-37 156.8 105 66.7
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 9.7e-37 156.8 108 68.5
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 1.3e-36 156.4 108 66.7
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 2.2e-36 155.6 91 73.6
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 3.7e-36 154.8 99 66.7
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 4.8e-36 154.5 100 66.0
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 8.2e-36 153.7 102 64.7
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 1.4e-35 152.9 103 64.1
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.4e-35 152.9 105 63.8
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 2.4e-35 152.1 108 63.9
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 2.4e-35 152.1 108 63.0
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 3.1e-35 151.8 105 63.8
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 3.1e-35 151.8 96 67.7
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 4.1e-35 151.4 103 65.0
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 4.1e-35 151.4 98 69.4
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 5.3e-35 151.0 106 63.2
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 6.9e-35 150.6 100 66.0
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 1.5e-34 149.4 99 63.6
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.0e-34 149.1 107 64.5
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 2.0e-34 149.1 105 62.9
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 2.0e-34 149.1 108 64.8
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.6e-34 148.7 107 64.5
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.6e-34 148.7 107 64.5
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 2.6e-34 148.7 107 64.5
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 4.5e-34 147.9 108 63.0
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 5.9e-34 147.5 105 62.9
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 1.3e-33 146.4 95 66.3
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 1.7e-33 146.0 110 60.0
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.9e-33 145.2 107 63.6
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 3.8e-33 144.8 108 62.0
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 8.5e-33 143.7 109 58.7
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 1.1e-32 143.3 107 61.7
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 1.4e-32 142.9 109 60.6
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 4.2e-32 141.4 115 60.9
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 9.3e-32 140.2 107 61.7
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 9.3e-32 140.2 92 65.2
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 1.6e-31 139.4 85 72.9
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 2.1e-31 139.0 105 61.0
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 3.6e-31 138.3 107 58.9
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 7.9e-31 137.1 109 60.6
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 1.4e-30 136.3 107 59.8
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 1.8e-30 136.0 107 58.9
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 1.8e-30 136.0 90 64.4
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 1.8e-30 136.0 108 54.6
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 1.8e-30 136.0 92 64.1
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 3.0e-30 135.2 107 58.9
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 3.0e-30 135.2 109 58.7
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.9e-30 134.8 96 63.5
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 5.1e-30 134.4 79 73.4
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 8.8e-30 133.7 107 58.9
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.1e-29 133.3 111 57.7
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 1.9e-29 132.5 107 57.0
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 2.5e-29 132.1 105 58.1
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 2.5e-29 132.1 105 58.1
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 3.3e-29 131.7 107 58.9
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 5.7e-29 131.0 107 57.0
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 5.7e-29 131.0 75 73.3
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 9.7e-29 130.2 112 53.6
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.3e-28 129.8 75 73.3
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 1.3e-28 129.8 102 60.8
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 1.3e-28 129.8 141 47.5
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 2.8e-28 128.6 107 57.0
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 2.8e-28 128.6 108 57.4
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 6.3e-28 127.5 108 57.4
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 8.2e-28 127.1 126 50.8
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 1.1e-27 126.7 78 71.8
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 3.1e-27 125.2 92 55.4
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 5.3e-27 124.4 94 56.4
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 6.9e-27 124.0 75 70.7
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 1.5e-26 122.9 122 49.2
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 4.5e-26 121.3 129 48.1
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 5.9e-26 120.9 88 56.8
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 7.7e-26 120.6 124 48.4
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 1.0e-25 120.2 123 48.8
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 1.7e-25 119.4 124 49.2
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 1.7e-25 119.4 124 49.2
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.7e-25 119.4 78 67.9
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 2.2e-25 119.0 78 66.7
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 6.5e-25 117.5 78 67.9
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 6.5e-25 117.5 75 66.7
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 3.6e-23 111.7 70 68.6
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 1.0e-22 110.2 73 68.5
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 2.3e-22 109.0 73 64.4
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 3.0e-22 108.6 90 50.0
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 6.7e-22 107.5 55 80.0
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 8.8e-22 107.1 72 69.4
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 3.3e-21 105.1 70 65.7
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 7.4e-21 104.0 77 62.3
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 9.7e-21 103.6 74 64.9
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 5.9e-18 94.4 79 55.7
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 5.0e-17 91.3 104 37.5
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 9.4e-16 87.0 124 40.3
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 1.8e-14 82.8 53 67.9
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 3.7e-12 75.1 40 82.5
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 7.0e-11 70.9 50 62.0
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 4.5e-10 68.2 40 72.5
CDE11G0759 Ceratophyllum demersum HOM05D006227 ORTHO05D129109 2.9e-09 65.5 52 59.6
RcHm_v2.0_Chr4g0411551 Rosa chinensis HOM05D000001 ORTHO05D000003 6.7e-06 54.3 30 76.7


User provided reference genes

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