Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.9e-228 795.4 389 100.0
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 2.7e-182 642.1 423 75.9
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.2e-179 632.5 423 74.9
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.8e-179 632.1 423 74.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 6.3e-179 630.9 423 73.8
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 8.2e-179 630.6 423 72.8
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 9.1e-178 627.1 423 72.3
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 2.6e-177 625.5 423 74.0
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.9e-176 622.1 423 72.8
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 6.5e-176 620.9 423 73.3
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 8.5e-176 620.5 423 73.3
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.1e-175 620.2 423 72.8
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.5e-175 619.0 423 72.8
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 4.2e-175 618.2 423 71.6
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.1e-174 615.9 423 71.9
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 2.7e-174 615.5 423 73.3
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 4.7e-174 614.8 423 71.9
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.7e-174 614.8 423 71.9
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 4.7e-174 614.8 422 73.5
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 6.1e-174 614.4 423 71.9
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 8.8e-173 610.5 423 70.9
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.6e-172 609.0 423 71.4
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.6e-172 609.0 423 71.4
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.3e-172 608.6 423 71.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.3e-171 606.7 423 70.9
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.2e-171 605.9 423 71.9
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.2e-171 605.9 423 71.9
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.8e-171 605.5 423 71.4
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.8e-171 605.5 423 70.9
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.2e-171 604.0 423 71.6
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 8.2e-171 604.0 423 70.9
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 8.2e-171 604.0 423 71.9
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.4e-170 602.4 423 71.9
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.4e-170 602.4 423 71.2
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 9.1e-170 600.5 423 70.9
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.2e-169 600.1 423 70.0
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.6e-169 599.7 423 70.9
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.6e-169 599.0 423 70.2
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.3e-168 596.7 423 71.4
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 5.0e-168 594.7 423 69.5
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 5.0e-168 594.7 423 71.4
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.5e-167 593.2 423 70.2
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 4.2e-167 591.7 408 71.3
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 5.5e-167 591.3 425 69.4
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 7.2e-167 590.9 424 69.8
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 7.2e-167 590.9 427 68.4
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 7.2e-167 590.9 423 69.5
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.7e-166 589.0 427 67.7
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.0e-165 587.0 423 70.2
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 5.2e-165 584.7 423 68.8
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.8e-165 583.9 423 70.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 3.4e-164 582.0 423 69.7
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 9.7e-164 580.5 427 67.4
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 9.7e-164 580.5 423 68.1
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 9.7e-164 580.5 423 69.0
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.7e-163 579.7 423 67.8
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 2.2e-163 579.3 423 68.3
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.2e-163 579.3 423 67.6
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 2.0e-161 572.8 411 70.1
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 2.7e-161 572.4 423 67.4
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 3.5e-161 572.0 423 67.1
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 4.5e-161 571.6 424 66.3
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-160 570.1 423 66.7
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.3e-160 570.1 424 67.9
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.9e-160 568.9 423 67.1
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 3.8e-160 568.5 422 66.4
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 6.5e-160 567.8 427 65.3
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-159 567.0 423 64.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 3.2e-159 565.5 423 66.4
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 3.2e-159 565.5 423 65.7
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 5.5e-159 564.7 424 66.7
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 9.4e-159 563.9 423 66.0
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.6e-158 563.1 410 67.3
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.6e-158 562.0 423 65.2
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 4.7e-158 561.6 423 66.7
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 8.0e-158 560.8 421 67.2
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 8.0e-158 560.8 423 65.5
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.8e-157 559.7 418 66.3
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.0e-157 558.9 424 66.3
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 3.0e-157 558.9 423 64.8
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.2e-156 557.0 424 65.3
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.6e-156 555.8 423 65.5
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 8.3e-155 550.8 424 65.8
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.2e-153 547.0 424 66.3
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.7e-153 545.8 423 64.3
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 7.7e-153 544.3 423 66.2
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 3.8e-152 542.0 423 62.9
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.1e-151 540.4 423 63.4
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.6e-150 536.6 423 63.1
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 4.7e-150 535.0 423 63.6
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.3e-149 532.7 423 63.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.0e-149 532.3 423 62.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.5e-148 530.0 423 63.6
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.5e-148 530.0 423 62.9
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.3e-147 526.9 424 63.9
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.0e-145 519.6 425 61.2
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.0e-144 517.3 423 61.2
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.7e-144 516.5 423 61.2
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.3e-144 516.2 423 61.9
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.9e-144 515.8 423 61.2
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 6.6e-144 514.6 423 60.8
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 6.6e-144 514.6 423 60.8
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.3e-139 500.4 423 58.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.3e-139 500.4 423 59.6
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.9e-139 499.2 424 59.4
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 6.4e-139 498.0 424 61.6
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.2e-138 495.7 380 64.5
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 6.0e-137 491.5 423 61.7
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.3e-136 490.3 423 61.5
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.3e-136 489.6 424 60.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 4.7e-134 481.9 423 56.5
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.6e-132 476.1 427 56.2
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 7.3e-127 458.0 424 54.7
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.2e-118 430.6 359 64.1
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 5.2e-117 425.2 409 52.8
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 6.4e-115 418.3 391 54.0
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 3.5e-113 412.5 428 50.2
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.8e-109 400.2 428 49.8
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.1e-101 374.4 282 66.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 8.4e-99 364.8 400 49.2
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.4e-98 364.0 422 45.0
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 6.7e-96 355.1 196 87.2
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 2.5e-82 310.1 377 43.8
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.1e-79 301.2 415 41.4
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 6.3e-78 295.4 271 59.4
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 7.2e-74 282.0 303 48.5
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 6.7e-72 275.4 251 55.8
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 8.2e-70 268.5 232 61.6
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.7e-59 234.2 123 87.0
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.1e-55 221.5 303 40.3
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.0e-47 194.1 161 62.1
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 1.6e-44 184.5 129 71.3
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.8e-38 163.7 99 76.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 5.6e-34 149.4 91 75.8
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.9e-28 129.4 74 79.7
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.0e-27 128.6 71 81.7
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 3.3e-26 123.6 71 80.3
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-25 119.8 71 78.9
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-25 119.8 71 78.9
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 3.7e-22 110.2 100 57.0
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 1.1e-10 72.0 160 37.5
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 4.3e-10 70.1 366 25.4
CsaV3_3G044070 Cucumis sativus L. HOM05D001477 ORTHO05D001182 1.8e-08 64.7 341 22.0
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 6.8e-08 62.8 37 70.3
MD17G1089600 Malus domestica HOM05D008065 ORTHO05D010197 8.9e-08 62.4 402 21.9
Actinidia37828 Actinidia chinensis HOM05D000312 ORTHO05D000493 1.5e-07 61.6 202 25.7
Psat3g075160 Pisum sativum HOM05D000312 ORTHO05D000221 2.6e-07 60.8 198 21.7
RcHm_v2.0_Chr2g0160731 Rosa chinensis HOM05D008065 ORTHO05D010197 8.4e-06 55.8 410 20.5


User provided reference genes

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