Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.5e-203 711.8 349 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.4e-129 466.8 453 58.5
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 2.9e-127 459.1 450 56.7
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.0e-125 451.1 421 59.9
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 1.5e-123 446.8 439 55.4
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 4.1e-121 438.7 451 56.5
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.0e-119 431.8 456 54.8
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.5e-118 430.3 449 53.9
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-118 430.3 455 54.7
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 9.5e-118 427.6 448 54.5
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 1.0e-116 424.1 453 54.1
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 2.0e-115 419.9 455 54.7
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 4.4e-115 418.7 441 53.1
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 5.7e-115 418.3 451 53.9
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 2.9e-114 416.0 451 53.4
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 2.9e-114 416.0 451 53.4
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 3.2e-113 412.5 448 53.6
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 2.3e-111 406.4 453 53.6
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.3e-111 406.4 456 53.1
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.6e-111 404.8 456 52.9
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 6.6e-111 404.8 447 53.5
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 2.5e-110 402.9 397 58.7
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 5.6e-110 401.7 446 52.9
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 3.6e-109 399.1 451 50.3
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.6e-109 399.1 455 52.3
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 6.2e-109 398.3 453 52.5
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 4.0e-108 395.6 446 51.3
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 2.0e-107 393.3 444 50.7
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 2.0e-107 393.3 444 50.7
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 8.3e-106 387.9 453 48.8
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 5.4e-105 385.2 444 50.2
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-104 384.0 452 50.0
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-103 379.4 415 52.5
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-103 379.0 422 52.1
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.0e-103 378.6 455 50.5
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.6e-103 377.9 395 55.7
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.6e-103 377.9 395 55.7
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.6e-103 377.9 395 55.7
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.6e-103 377.9 395 55.7
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.6e-103 377.9 395 55.7
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.2e-101 371.7 455 49.9
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.0e-100 369.0 440 52.3
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.5e-99 364.8 456 48.9
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 6.4e-98 361.7 451 47.5
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 8.3e-98 361.3 453 49.7
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-96 357.1 391 53.7
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 3.0e-95 352.8 416 50.2
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 4.3e-94 349.0 415 49.4
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 5.6e-94 348.6 355 56.3
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 6.2e-93 345.1 438 47.9
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.1e-93 344.7 399 51.6
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 3.4e-91 339.3 434 47.2
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.3e-90 337.4 455 45.9
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-89 334.3 357 53.8
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.4e-84 316.6 422 45.3
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.9e-81 307.0 293 58.4
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 1.1e-78 297.7 227 66.5
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.1e-77 291.6 282 58.9
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 4.5e-75 285.8 222 66.2
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 9.3e-73 278.1 335 49.0
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 2.5e-70 270.0 221 62.4
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 2.5e-70 270.0 221 62.4
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 2.5e-70 270.0 221 62.4
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 2.5e-70 270.0 221 62.4
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 2.5e-70 270.0 221 62.4
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 4.8e-69 265.8 283 53.4
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.4e-68 264.2 335 46.9
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.2e-67 261.2 349 48.4
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 6.2e-61 238.8 308 47.7
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 2.5e-57 226.9 292 48.3
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 7.9e-56 221.9 294 44.9
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.0e-55 219.9 238 52.1
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 3.0e-55 219.9 238 52.1
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.3e-54 216.5 176 61.9
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 2.2e-53 213.8 178 63.5
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.9e-49 200.7 167 64.1
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.1e-48 197.2 125 78.4
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.6e-48 196.4 360 38.9
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.8e-47 194.1 167 62.9
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 2.5e-46 190.3 152 64.5
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-46 189.9 159 64.8
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 2.2e-45 187.2 129 65.9
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 6.9e-44 182.2 365 38.4
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-43 181.4 220 48.6
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.7e-42 177.6 135 68.9
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 1.9e-41 174.1 153 61.4
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 7.2e-41 172.2 118 75.4
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.7e-40 170.2 241 43.2
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 3.6e-40 169.9 305 42.3
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 8.8e-39 165.2 131 68.7
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.3e-37 161.4 125 65.6
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 6.9e-36 155.6 108 66.7
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 7.7e-35 152.1 150 54.0
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.3e-34 151.4 146 58.2
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 1.7e-34 151.0 159 56.0
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 3.8e-34 149.8 106 72.6
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 8.0e-32 142.1 125 61.6
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.4e-31 141.4 199 44.2
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.4e-31 141.4 94 76.6
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-31 141.0 177 49.2
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.9e-31 139.8 94 74.5
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 3.9e-31 139.8 101 63.4
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 3.3e-30 136.7 164 50.0
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 9.7e-30 135.2 315 32.7
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.1e-28 131.7 86 74.4
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.8e-28 131.0 120 62.5
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.1e-28 130.2 81 75.3
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 7.0e-28 129.0 110 58.2
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.0e-28 129.0 94 71.3
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 6.5e-26 122.5 71 81.7
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-24 117.9 127 57.5
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-22 110.2 172 44.2
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.3e-21 108.2 120 52.5
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 1.7e-21 107.8 74 66.2
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.8e-21 106.3 79 63.3
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.4e-20 104.8 77 71.4
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 7.0e-20 102.4 46 97.8
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 9.1e-20 102.1 68 73.5
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-19 101.3 82 63.4
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.1e-17 95.1 93 59.1
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.2e-17 93.6 182 34.1
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 8.0e-16 89.0 72 68.1
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 2.2e-13 80.9 75 57.3
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 1.1e-12 78.6 70 61.4
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.4e-12 78.2 73 58.9
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 5.4e-12 76.3 50 66.0
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 5.4e-12 76.3 61 63.9
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 2.0e-11 74.3 62 56.5
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 8.6e-10 68.9 42 66.7
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 9.5e-09 65.5 43 67.4
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.2e-08 65.1 72 43.1
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 2.1e-08 64.3 217 27.6
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 6.1e-08 62.8 41 70.7
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 3.0e-07 60.5 82 51.2
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.0e-07 60.5 42 73.8
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 1.2e-06 58.5 47 61.7
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 3.4e-06 57.0 95 38.9
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.7e-06 56.2 62 58.1
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 5.7e-06 56.2 34 76.5


User provided reference genes

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