Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 1.2e-59 233.0 121 100.0
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.2e-32 143.3 129 60.5
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 4.0e-31 138.3 120 60.8
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 3.7e-29 131.7 115 61.7
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 3.7e-29 131.7 117 59.8
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.4e-29 131.0 123 59.3
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.4e-28 129.8 118 61.0
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.4e-28 129.8 130 58.5
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 2.4e-28 129.0 119 58.0
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.6e-27 126.3 119 60.5
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 1.7e-26 122.9 124 58.1
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 2.3e-26 122.5 131 60.3
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 1.5e-25 119.8 119 57.1
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 5.6e-25 117.9 118 55.1
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 7.3e-25 117.5 121 55.4
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 1.6e-24 116.3 122 54.9
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.7e-24 114.8 134 54.5
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.7e-24 114.8 134 54.5
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 6.2e-24 114.4 123 53.7
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.0e-23 113.6 128 54.7
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-23 113.6 134 54.5
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.0e-23 113.6 128 54.7
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.4e-23 113.2 121 57.9
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 1.4e-23 113.2 134 53.7
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.8e-23 112.8 135 54.1
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.2e-22 110.2 125 52.0
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.5e-22 109.8 121 48.8
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.5e-22 109.8 121 48.8
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 1.5e-22 109.8 113 54.9
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.5e-22 109.8 125 52.8
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.4e-22 108.6 81 67.9
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.4e-22 108.2 123 50.4
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 9.8e-22 107.1 135 48.1
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.9e-21 105.5 108 54.6
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 3.7e-21 105.1 111 56.8
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.9e-20 102.8 115 50.4
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 2.4e-20 102.4 119 52.9
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 5.4e-20 101.3 77 68.8
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 5.4e-20 101.3 126 50.8
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 9.2e-20 100.5 107 55.1
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 9.2e-20 100.5 123 50.4
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 1.6e-19 99.8 122 54.1
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.6e-19 99.8 107 54.2
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 3.5e-19 98.6 110 53.6
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 3.5e-19 98.6 116 50.0
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 3.5e-19 98.6 113 54.0
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 4.6e-19 98.2 73 72.6
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 6.0e-19 97.8 117 51.3
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 6.0e-19 97.8 95 61.1
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 7.8e-19 97.4 66 75.8
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 2.3e-18 95.9 115 45.2
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 5.0e-18 94.7 105 55.2
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 8.6e-18 94.0 101 53.5
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 1.1e-17 93.6 110 50.0
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 2.5e-17 92.4 88 61.4
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.3e-17 92.0 72 66.7
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.6e-17 91.3 105 48.6
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 5.6e-17 91.3 68 72.1
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 5.6e-17 91.3 73 63.0
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 7.3e-17 90.9 123 46.3
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 7.3e-17 90.9 72 66.7
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 7.3e-17 90.9 72 66.7
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 7.3e-17 90.9 72 66.7
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 7.3e-17 90.9 72 66.7
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 7.3e-17 90.9 72 66.7
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 7.3e-17 90.9 72 66.7
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 7.3e-17 90.9 111 51.4
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 9.5e-17 90.5 72 65.3
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 9.5e-17 90.5 72 65.3
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-16 90.1 72 65.3
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-16 90.1 72 65.3
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-16 90.1 72 65.3
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.2e-16 90.1 72 65.3
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 1.2e-16 90.1 72 65.3
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 1.6e-16 89.7 110 51.8
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.8e-16 89.0 72 65.3
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 2.8e-16 89.0 133 45.1
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 3.6e-16 88.6 72 62.5
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 3.6e-16 88.6 113 46.0
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 3.6e-16 88.6 72 65.3
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 6.2e-16 87.8 72 63.9
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 6.2e-16 87.8 68 69.1
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 8.1e-16 87.4 110 51.8
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.1e-15 87.0 141 44.0
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 1.1e-15 87.0 128 43.8
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 1.4e-15 86.7 128 44.5
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 1.8e-15 86.3 118 48.3
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.8e-15 86.3 73 65.8
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 2.3e-15 85.9 105 45.7
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.3e-15 85.9 72 59.7
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 4.0e-15 85.1 74 64.9
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 5.2e-15 84.7 69 65.2
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 8.9e-15 84.0 106 50.0
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 1.2e-14 83.6 130 42.3
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 1.2e-14 83.6 167 39.5
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 2.0e-14 82.8 116 44.0
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 2.0e-14 82.8 122 43.4
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 2.6e-14 82.4 103 48.5
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.6e-14 82.4 114 46.5
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 4.4e-14 81.6 125 40.0
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 4.4e-14 81.6 115 46.1
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 9.8e-14 80.5 114 46.5
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 1.3e-13 80.1 113 47.8
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 2.2e-13 79.3 105 44.8
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 3.7e-13 78.6 125 44.0
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 3.7e-13 78.6 111 41.4
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 4.9e-13 78.2 99 46.5
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.4e-12 76.6 66 62.1
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.4e-12 76.6 111 42.3
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 1.9e-12 76.3 111 44.1
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 2.4e-12 75.9 120 40.8
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.4e-12 75.9 112 43.8
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 3.2e-12 75.5 65 60.0
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 4.1e-12 75.1 131 42.7
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 5.4e-12 74.7 72 55.6
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 9.2e-12 73.9 81 51.9
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 1.2e-11 73.6 99 50.5
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 1.2e-11 73.6 117 44.4
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 2.7e-11 72.4 125 38.4
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.5e-11 72.0 77 54.5
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 6.0e-11 71.2 117 42.7
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 6.0e-11 71.2 117 44.4
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 1.3e-10 70.1 81 50.6
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 1.3e-10 70.1 65 60.0
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.7e-10 69.7 72 54.2
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 5.1e-10 68.2 71 54.9
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 5.1e-10 68.2 115 40.9
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 8.6e-10 67.4 65 58.5
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 8.6e-10 67.4 83 50.6
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 8.6e-10 67.4 85 48.2
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 1.9e-09 66.2 85 47.1
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 3.3e-09 65.5 88 46.6
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 4.3e-09 65.1 119 37.0
Gohir.A09G132200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.6e-09 64.7 92 41.3
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 5.6e-09 64.7 93 44.1
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 2.1e-08 62.8 113 36.3
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 4.7e-08 61.6 69 53.6
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 4.7e-08 61.6 69 53.6
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 4.7e-08 61.6 69 53.6
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 1.1e-07 60.5 124 33.9
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 1.1e-07 60.5 79 48.1
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.4e-07 60.1 69 52.2
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.4e-07 60.1 69 52.2
Ciclev10009903m.g Citrus clementina HOM05D002758 ORTHO05D002885 1.4e-07 60.1 106 35.8
Glyma.03G204600 Glycine max HOM05D005113 ORTHO05D006045 2.6e-06 55.8 112 37.5
DCAR_017810 Daucus carota HOM05D002758 ORTHO05D002885 5.8e-06 54.7 101 34.7


User provided reference genes

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