Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.5e-228 795.8 404 100.0
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 2.1e-161 572.8 404 72.3
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 6.1e-161 571.2 403 73.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.3e-158 563.5 402 71.1
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.7e-158 562.0 404 70.5
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 9.5e-154 547.4 402 68.7
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.5e-154 547.4 405 70.6
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.6e-153 546.6 403 70.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-152 543.5 403 68.5
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 7.5e-151 537.7 395 69.6
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.9e-149 533.1 396 68.4
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.2e-149 532.3 401 68.6
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.4e-149 531.6 398 68.8
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.9e-146 523.1 399 67.9
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 5.6e-146 521.5 402 68.2
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.4e-144 516.9 398 64.8
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.5e-143 513.5 403 65.5
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 3.4e-143 512.3 398 65.6
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.7e-142 510.0 405 65.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 4.9e-142 508.4 410 63.4
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 1.1e-141 507.3 398 64.1
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.9e-141 506.5 403 65.3
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.9e-141 506.5 405 64.9
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 3.2e-141 505.8 404 65.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 7.8e-140 501.1 406 65.5
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.3e-139 500.4 460 59.6
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.3e-139 500.4 403 64.3
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 1.3e-139 500.4 400 65.8
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 1.7e-139 500.0 398 64.3
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 1.7e-139 500.0 397 64.5
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.3e-139 499.6 443 61.6
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 3.9e-139 498.8 400 65.8
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 3.3e-138 495.7 397 63.7
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 4.3e-138 495.4 401 62.8
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.6e-137 493.4 400 65.5
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.8e-137 492.7 400 65.0
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.6e-137 492.3 408 63.2
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 6.2e-137 491.5 402 63.7
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.1e-137 491.1 402 63.7
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.4e-136 490.3 399 64.7
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.2e-136 488.4 402 63.9
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.2e-136 488.4 402 63.9
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 6.8e-136 488.0 399 62.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 8.9e-136 487.6 399 63.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 2.0e-135 486.5 398 62.8
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.6e-135 486.1 402 63.2
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.4e-135 485.7 395 62.8
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.4e-135 485.7 393 63.9
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 5.8e-135 485.0 397 62.0
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 9.9e-135 484.2 403 63.8
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-134 483.8 408 62.3
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.8e-134 482.3 389 67.6
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 4.9e-134 481.9 404 63.4
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 6.4e-134 481.5 398 62.8
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 8.4e-134 481.1 402 63.4
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.1e-133 480.7 396 62.4
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.4e-133 479.6 394 61.9
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 9.2e-133 477.6 395 62.0
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 1.2e-132 477.2 396 64.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 2.7e-132 476.1 394 62.7
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.6e-132 475.3 406 60.3
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.6e-132 475.3 394 64.2
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 4.6e-132 475.3 399 62.7
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.0e-131 474.2 405 60.2
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 3.9e-131 472.2 401 61.3
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 5.6e-130 468.4 399 62.9
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 8.1e-129 464.5 401 62.8
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.4e-128 463.8 401 60.1
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.4e-128 463.8 391 62.1
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.2e-127 460.7 395 60.8
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.6e-127 459.5 394 60.9
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 4.9e-126 455.3 396 59.6
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 8.4e-126 454.5 395 60.5
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.4e-125 453.8 428 57.0
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 7.8e-124 448.0 401 59.9
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 7.8e-124 448.0 408 60.0
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.5e-122 443.0 401 57.4
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.3e-122 442.6 395 59.5
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 5.8e-119 431.8 400 56.5
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.3e-118 430.6 392 57.7
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.7e-118 430.3 392 57.1
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 8.4e-118 427.9 401 57.4
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.4e-117 426.4 403 55.8
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 2.4e-117 426.4 432 54.9
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.2e-117 425.6 295 70.2
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 5.4e-117 425.2 401 60.1
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.1e-117 424.9 392 56.6
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.1e-117 424.9 395 56.7
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.6e-116 423.7 378 61.6
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 4.6e-116 422.2 404 58.4
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.3e-115 419.9 399 56.6
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.1e-115 418.7 395 56.2
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 3.3e-114 416.0 391 58.8
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.6e-113 413.7 402 55.0
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.6e-113 413.7 469 52.0
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 4.8e-113 412.1 411 53.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.5e-111 407.1 422 52.4
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 6.4e-110 401.7 389 58.4
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 5.5e-109 398.7 389 58.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 7.9e-108 394.8 389 57.1
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 5.1e-107 392.1 397 56.2
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.8e-104 383.6 406 53.7
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 6.5e-102 375.2 298 63.1
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 6.5e-102 375.2 407 50.9
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.9e-101 373.6 457 47.3
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.5e-100 369.4 314 61.5
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 3.3e-98 362.8 356 55.9
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.1e-93 347.8 404 47.3
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.5e-93 346.7 270 64.4
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 8.2e-89 331.6 396 48.5
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 9.1e-88 328.2 377 50.1
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.4e-83 314.3 408 48.0
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 5.1e-83 312.4 411 45.7
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 5.1e-83 312.4 424 43.4
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 9.7e-82 308.1 246 68.3
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.6e-76 289.7 401 45.6
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 8.0e-76 288.5 444 41.0
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 5.2e-75 285.8 380 46.6
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.8e-72 277.3 466 38.0
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.2e-68 264.6 403 41.9
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.2e-62 243.8 185 66.5
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 3.2e-61 240.0 166 66.3
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.8e-59 234.2 278 44.6
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 6.8e-59 232.3 221 57.0
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 4.1e-56 223.0 313 46.0
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-47 194.9 170 57.6
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-47 194.9 155 61.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 3.8e-46 189.9 174 55.7
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 7.5e-42 175.6 198 54.0
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.3e-38 164.1 110 68.2
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-37 161.4 175 53.7
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 7.0e-32 142.5 307 35.2
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 7.0e-32 142.5 92 71.7
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-27 128.6 181 47.5
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 3.3e-21 107.1 146 41.8
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 3.6e-20 103.6 114 48.2
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.7e-14 84.7 95 47.4
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 6.6e-14 82.8 82 52.4
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.1e-13 82.0 117 41.9
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 2.5e-13 80.9 64 67.2
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.5e-13 80.9 64 67.2
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.8e-12 77.4 49 75.5
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 9.0e-11 72.4 299 24.1
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.4e-10 70.1 177 35.0
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 8.4e-09 65.9 111 41.4
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 8.4e-09 65.9 111 41.4


User provided reference genes

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