Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 0.0e+00 1468.8 727 100.0
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 0.0e+00 1075.8 726 71.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 4.2e-309 1064.3 700 74.1
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 1.2e-308 1062.8 730 70.7
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 4.0e-304 1047.7 732 71.6
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 2.0e-303 1045.4 728 70.7
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.8e-303 1043.9 730 70.7
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 3.8e-302 1041.2 737 68.8
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 2.4e-301 1038.5 738 69.1
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 9.3e-301 1036.6 736 68.3
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 3.5e-300 1034.6 733 70.0
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 6.0e-300 1033.9 732 68.4
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.9e-299 1031.2 737 68.5
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.1e-298 1029.6 733 70.1
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.9e-298 1028.9 730 69.2
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 1.4e-296 1022.7 729 68.3
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 2.4e-296 1021.9 728 68.4
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 3.1e-296 1021.5 726 69.4
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.0e-296 1021.1 728 68.3
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.3e-296 1020.8 728 68.3
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 5.3e-296 1020.8 728 69.2
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.2e-295 1019.6 727 67.3
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.8e-295 1017.3 728 68.3
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 3.8e-294 1014.6 731 68.8
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 6.4e-294 1013.8 731 66.9
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 8.4e-294 1013.4 728 69.0
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 5.5e-293 1010.7 731 68.5
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 2.7e-292 1008.4 727 67.0
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.5e-290 1002.7 765 66.0
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.5e-290 1002.7 726 67.1
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 2.5e-290 1001.9 726 66.8
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.3e-289 999.6 769 65.8
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.2e-289 997.3 726 66.7
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.4e-288 996.1 728 68.0
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.8e-288 995.7 745 67.5
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 5.3e-288 994.2 726 66.7
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 5.3e-288 994.2 728 67.9
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 3.4e-287 991.5 727 66.9
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 7.6e-287 990.3 725 66.5
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.7e-286 989.2 726 67.1
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 2.2e-286 988.8 726 66.1
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 3.8e-286 988.0 724 65.6
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 6.5e-286 987.3 739 67.3
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 2.5e-285 985.3 726 67.1
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.6e-284 982.6 729 66.1
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 2.7e-284 981.9 724 64.9
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.3e-283 979.5 729 65.4
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.8e-283 979.2 728 64.6
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.0e-283 978.4 728 67.4
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 6.7e-283 977.2 724 64.9
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.3e-282 974.9 729 66.3
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 3.7e-281 971.5 727 64.6
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 4.8e-281 971.1 729 65.0
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 6.9e-280 967.2 735 64.9
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 9.0e-280 966.8 728 65.8
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 1.7e-278 962.6 727 64.2
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.2e-278 962.2 731 64.4
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 2.9e-278 961.8 727 63.8
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.5e-277 958.7 731 64.0
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 4.2e-277 958.0 724 64.5
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 4.2e-277 958.0 789 61.5
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.3e-273 946.4 726 63.9
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.8e-272 942.6 727 63.3
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 4.1e-272 941.4 726 64.9
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 5.9e-271 937.6 728 63.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 2.3e-267 925.6 729 64.6
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 3.9e-267 924.9 674 67.5
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 1.4e-261 906.4 731 62.1
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 7.2e-261 904.0 708 62.4
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 5.2e-259 897.9 707 62.2
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 5.2e-259 897.9 654 66.7
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 4.4e-250 868.2 724 62.2
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 1.7e-246 856.3 729 60.1
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 7.2e-245 850.9 733 59.8
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.0e-243 847.0 750 58.9
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.3e-243 845.9 673 63.9
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 5.7e-242 841.3 724 57.9
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 2.2e-241 839.3 609 66.8
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 7.0e-240 834.3 724 57.5
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 3.6e-236 822.0 605 66.6
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.4e-235 820.1 822 55.1
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 1.8e-235 819.7 637 64.5
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 6.8e-235 817.8 706 57.9
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 8.9e-235 817.4 621 65.9
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 1.8e-232 809.7 607 64.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 7.3e-229 797.7 729 54.2
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.7e-225 786.6 762 55.5
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.0e-219 765.4 619 63.7
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.9e-214 748.8 500 72.4
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 5.2e-211 738.4 637 59.3
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.4e-208 728.4 495 70.9
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.4e-203 713.8 729 53.2
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.0e-202 709.9 728 53.0
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 9.9e-202 707.6 621 55.7
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.0e-194 683.3 457 71.3
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 3.8e-193 679.1 456 70.4
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.0e-190 669.5 526 64.6
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 6.2e-172 608.6 738 45.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 2.3e-166 590.1 741 44.4
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 4.3e-165 585.9 428 68.2
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 4.7e-151 539.3 601 47.8
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.1e-139 499.6 639 48.2
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 3.8e-137 493.0 446 55.2
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.6e-133 480.3 583 42.9
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 6.3e-132 475.7 383 63.7
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 3.4e-125 453.4 840 34.8
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 2.8e-124 450.3 350 64.3
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-110 404.8 482 43.6
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.4e-109 399.8 289 66.1
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.4e-109 399.8 542 40.0
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.2e-99 367.1 470 43.0
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.8e-94 349.4 225 72.4
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.5e-80 305.1 231 66.7
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.3e-65 254.6 188 66.5
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 9.3e-59 232.6 377 39.0
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.0e-57 227.6 125 74.4
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 4.8e-55 220.3 253 46.2
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.4e-54 218.0 174 63.8
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.2e-53 215.7 318 40.3
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.2e-51 207.6 126 76.2
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 4.2e-51 207.2 303 36.6
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.3e-47 195.7 198 55.6
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 3.1e-46 191.0 126 73.0
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-34 152.1 114 56.1
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.4e-33 149.1 169 50.9
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 3.9e-33 147.5 108 68.5
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 5.1e-33 147.1 104 71.2
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.4e-25 122.5 131 48.9
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 7.0e-22 110.2 78 69.2
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 4.7e-18 97.4 108 47.2
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 5.2e-17 94.0 66 59.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 5.4e-14 84.0 61 57.4
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 9.1e-14 83.2 87 50.6
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 1.3e-12 79.3 252 29.0
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 9.4e-11 73.2 44 72.7
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.8e-09 68.9 60 53.3
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 3.0e-09 68.2 44 65.9
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 4.0e-09 67.8 94 42.6
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 8.8e-09 66.6 43 65.1
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 4.4e-08 64.3 39 69.2
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 7.0e-06 57.0 75 44.0


User provided reference genes

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