Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 3.5e-82 308.1 147 100.0
GSVIVG01022072001 Vitis vinifera HOM05D000108 ORTHO05D001407 1.5e-16 90.1 50 86.0
CSS0037830 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D024725 7.3e-11 71.2 56 62.5
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 9.5e-11 70.9 35 88.6
Aqoxy5G01177 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 4.7e-10 68.6 47 61.7
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 4.7e-10 68.6 35 82.9
TAR381G1061 Trochodendron aralioides HOM05D000108 ORTHO05D001407 4.7e-10 68.6 50 62.0
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 8.0e-10 67.8 35 85.7
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.4e-09 67.0 35 80.0
Atru.chr3.277 Acer truncatum HOM05D000108 ORTHO05D001407 1.8e-09 66.6 49 67.3
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 1.8e-09 66.6 35 82.9
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 2.3e-09 66.2 35 80.0
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.3e-09 66.2 35 82.9
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.3e-09 66.2 35 82.9
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.3e-09 66.2 35 82.9
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.1e-09 65.9 36 77.8
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 3.1e-09 65.9 35 82.9
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 4.0e-09 65.5 35 80.0
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 4.0e-09 65.5 35 80.0
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 4.0e-09 65.5 36 75.0
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 4.0e-09 65.5 36 75.0
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 4.0e-09 65.5 36 75.0
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 5.2e-09 65.1 35 80.0
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 5.2e-09 65.1 36 75.0
Cfa009958 Carpinus fangiana HOM05D000108 ORTHO05D001407 5.2e-09 65.1 50 66.0
Dinv26849 Davidia involucrata HOM05D000108 ORTHO05D001407 5.2e-09 65.1 50 64.0
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.2e-09 65.1 39 74.4
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.2e-09 65.1 39 74.4
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 5.2e-09 65.1 39 74.4
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 5.2e-09 65.1 35 80.0
Prupe.6G231200 Prunus persica HOM05D000108 ORTHO05D001407 5.2e-09 65.1 50 64.0
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 6.8e-09 64.7 39 71.8
MD02G1176500 Malus domestica HOM05D000108 ORTHO05D001407 6.8e-09 64.7 48 62.5
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 6.8e-09 64.7 44 65.9
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 8.9e-09 64.3 36 75.0
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 8.9e-09 64.3 35 77.1
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 8.9e-09 64.3 35 80.0
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 8.9e-09 64.3 35 80.0
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 8.9e-09 64.3 36 75.0
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-08 63.9 35 77.1
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-08 63.9 35 77.1
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-08 63.9 36 75.0
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.2e-08 63.9 36 75.0
CiPaw.16G038800 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.2e-08 63.9 68 48.5
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.2e-08 63.9 35 80.0
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.2e-08 63.9 35 80.0
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.2e-08 63.9 35 80.0
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.2e-08 63.9 35 80.0
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.2e-08 63.9 35 77.1
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 1.5e-08 63.5 36 75.0
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 1.5e-08 63.5 36 75.0
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.0e-08 63.2 35 80.0
FAN23G1484 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.0e-08 63.2 50 62.0
FAN26G3154 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.0e-08 63.2 50 62.0
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.0e-08 63.2 35 77.1
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.0e-08 63.2 36 75.0
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 2.0e-08 63.2 35 80.0
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.0e-08 63.2 35 77.1
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.6e-08 62.8 35 80.0
FvH4_1g16400 Fragaria vesca HOM05D000108 ORTHO05D001407 2.6e-08 62.8 50 62.0
FAN19G1469 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.6e-08 62.8 50 62.0
Gohir.A05G204800 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.6e-08 62.8 59 52.5
Gohir.D05G208100 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.6e-08 62.8 59 52.5
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.6e-08 62.8 35 80.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 2.6e-08 62.8 35 77.1
Nn5g30372 Nelumbo nucifera HOM05D000108 ORTHO05D001407 3.4e-08 62.4 50 58.0
RcHm_v2.0_Chr2g0106281 Rosa chinensis HOM05D000108 ORTHO05D001407 3.4e-08 62.4 66 53.0
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 3.4e-08 62.4 35 77.1
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 4.4e-08 62.0 35 77.1
CiPaw.15G053700 Carya illinoinensis HOM05D000108 ORTHO05D001407 4.4e-08 62.0 66 51.5
Potri.014G024700 Populus trichocarpa HOM05D000108 ORTHO05D001407 4.4e-08 62.0 50 60.0
Haze_18063 Corylus avellana HOM05D000108 ORTHO05D001407 5.8e-08 61.6 50 62.0
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 5.8e-08 61.6 36 77.8
Potri.002G123500 Populus trichocarpa HOM05D000108 ORTHO05D001407 5.8e-08 61.6 50 62.0
Sabra02G0097000 Salix brachista HOM05D000108 ORTHO05D001407 5.8e-08 61.6 50 62.0
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 7.5e-08 61.2 36 75.0
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 7.5e-08 61.2 35 74.3
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 7.5e-08 61.2 35 74.3
Gorai.009G214600 Gossypium raimondii HOM05D000108 ORTHO05D001407 7.5e-08 61.2 59 54.2
Prupe.1G431500 Prunus persica HOM05D000108 ORTHO05D001407 7.5e-08 61.2 50 56.0
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 9.8e-08 60.8 36 72.2
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 9.8e-08 60.8 35 74.3
FAN28G2690 Fragaria x ananassa HOM05D000108 ORTHO05D001407 9.8e-08 60.8 66 50.0
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 9.8e-08 60.8 39 71.8
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 9.8e-08 60.8 36 72.2
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.3e-07 60.5 35 74.3
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.3e-07 60.5 35 74.3
FvH4_2g33960 Fragaria vesca HOM05D000108 ORTHO05D001407 1.3e-07 60.5 49 63.3
FAN20G1303 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.3e-07 60.5 49 63.3
FAN24G0477 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.3e-07 60.5 49 63.3
FAN27G3215 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.3e-07 60.5 49 63.3
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.3e-07 60.5 36 75.0
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.3e-07 60.5 36 69.4
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.7e-07 60.1 35 74.3
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 1.7e-07 60.1 35 74.3
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.7e-07 60.1 35 74.3
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.7e-07 60.1 35 74.3
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.7e-07 60.1 35 71.4
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.7e-07 60.1 36 72.2
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.7e-07 60.1 36 72.2
QL02p004148 Quercus lobata HOM05D000108 ORTHO05D001407 1.7e-07 60.1 50 58.0
Sabra14G0016800 Salix brachista HOM05D000108 ORTHO05D001407 1.7e-07 60.1 50 60.0
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.7e-07 60.1 35 74.3
GSVIVG01009447001 Vitis vinifera HOM05D000108 ORTHO05D001407 1.7e-07 60.1 47 61.7
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.2e-07 59.7 36 69.4
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 2.2e-07 59.7 36 69.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.2e-07 59.7 36 69.4
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.2e-07 59.7 35 74.3
MD08G1095500 Malus domestica HOM05D000108 ORTHO05D001407 2.9e-07 59.3 50 58.0
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.9e-07 59.3 35 74.3
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 3.7e-07 58.9 36 69.4
Duzib041G0597 Durio zibethinus HOM05D000108 ORTHO05D001407 3.7e-07 58.9 50 60.0
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.7e-07 58.9 36 72.2
Manes.18G040600 Manihot esculenta HOM05D000108 ORTHO05D001407 3.7e-07 58.9 50 56.0
COL.COLO4_10130 Corchorus olitorius HOM05D000108 ORTHO05D001407 4.9e-07 58.5 50 58.0
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 4.9e-07 58.5 35 71.4
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 4.9e-07 58.5 35 71.4
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 4.9e-07 58.5 35 71.4
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 4.9e-07 58.5 40 62.5
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 4.9e-07 58.5 36 72.2
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 6.4e-07 58.2 34 67.6
Duzib093G1694 Durio zibethinus HOM05D000108 ORTHO05D001407 6.4e-07 58.2 66 45.5
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 6.4e-07 58.2 36 72.2
RcHm_v2.0_Chr6g0308451 Rosa chinensis HOM05D000108 ORTHO05D001407 6.4e-07 58.2 70 50.0
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 8.3e-07 57.8 34 67.6
Duzib264G0030 Durio zibethinus HOM05D000108 ORTHO05D001407 8.3e-07 57.8 49 57.1
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 8.3e-07 57.8 36 72.2
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 8.3e-07 57.8 36 69.4
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.4e-06 57.0 36 66.7
CANSAT25G3670 Cannabis sativa HOM05D000108 ORTHO05D001407 1.4e-06 57.0 63 52.4
CiPaw.01G014700 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.4e-06 57.0 59 54.2
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.4e-06 57.0 36 66.7
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.4e-06 57.0 35 71.4
Thecc.01G061100 Theobroma cacao HOM05D000108 ORTHO05D001407 1.4e-06 57.0 49 57.1
Thecc.08G002500 Theobroma cacao HOM05D000108 ORTHO05D001407 1.4e-06 57.0 50 58.0
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.9e-06 56.6 34 73.5
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.9e-06 56.6 35 71.4
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.9e-06 56.6 35 71.4
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.4e-06 56.2 36 66.7
Cpa.g.sc55.112 Carica papaya HOM05D000108 ORTHO05D001407 2.4e-06 56.2 47 61.7
Ciclev10024786m.g Citrus clementina HOM05D000108 ORTHO05D001407 2.4e-06 56.2 49 57.1
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 2.4e-06 56.2 35 71.4
Manes.12G107000 Manihot esculenta HOM05D000108 ORTHO05D001407 2.4e-06 56.2 56 48.2
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 2.4e-06 56.2 35 71.4
Hma1.2p1_0017F.1_g011760 Hydrangea macrophylla HOM05D000108 ORTHO05D001407 3.2e-06 55.8 48 54.2
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.2e-06 55.8 34 70.6
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 3.2e-06 55.8 34 70.6
Atru.chr13.740 Acer truncatum HOM05D000108 ORTHO05D001407 4.1e-06 55.5 59 49.2
Dinv35931 Davidia involucrata HOM05D000108 ORTHO05D001407 4.1e-06 55.5 59 52.5
Eucgr.F02315 Eucalyptus grandis HOM05D000108 ORTHO05D001407 4.1e-06 55.5 47 59.6
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 4.1e-06 55.5 36 69.4
CDE02G2520 Ceratophyllum demersum HOM05D000108 ORTHO05D001407 5.4e-06 55.1 50 48.0
Dinv39279 Davidia involucrata HOM05D000108 ORTHO05D001407 5.4e-06 55.1 50 56.0
MD15G1077800 Malus domestica HOM05D000108 ORTHO05D001407 5.4e-06 55.1 49 55.1
QL06p040483 Quercus lobata HOM05D000108 ORTHO05D001407 5.4e-06 55.1 50 58.0
vmacro21491 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 5.4e-06 55.1 50 54.0
Haze_18057 Corylus avellana HOM05D000108 ORTHO05D001407 7.0e-06 54.7 60 50.0
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 7.0e-06 54.7 62 46.8
Hma1.2p1_0360F.1_g135830 Hydrangea macrophylla HOM05D000108 ORTHO05D001407 9.2e-06 54.3 56 46.4
Manes.05G176400 Manihot esculenta HOM05D000108 ORTHO05D001407 9.2e-06 54.3 59 45.8
THA.LOC104827303 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 9.2e-06 54.3 47 59.6


User provided reference genes

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