Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.1e-40 169.5 83 100.0
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.8e-14 82.4 52 76.9
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 5.9e-10 67.4 52 63.5
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.0e-09 66.6 52 61.5
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.3e-09 66.2 52 61.5
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.3e-09 66.2 52 61.5
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.3e-09 66.2 52 65.4
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.2e-09 65.5 52 61.5
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 2.2e-09 65.5 52 63.5
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 5.0e-09 64.3 52 57.7
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 6.5e-09 63.9 52 59.6
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 8.5e-09 63.5 52 57.7
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 8.5e-09 63.5 58 51.7
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 8.5e-09 63.5 53 62.3
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 8.5e-09 63.5 48 64.6
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 8.5e-09 63.5 43 72.1
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 1.1e-08 63.2 44 68.2
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 1.5e-08 62.8 52 59.6
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.5e-08 62.8 44 65.9
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.9e-08 62.4 52 65.4
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.9e-08 62.4 43 69.8
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.9e-08 62.4 52 55.8
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.9e-08 62.4 51 58.8
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 2.5e-08 62.0 52 61.5
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.2e-08 61.6 52 57.7
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.2e-08 61.2 52 57.7
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.2e-08 61.2 52 57.7
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.2e-08 61.2 47 59.6
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.2e-08 61.2 52 53.8
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 4.2e-08 61.2 42 71.4
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 4.2e-08 61.2 50 60.0
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 5.5e-08 60.8 52 55.8
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 5.5e-08 60.8 50 60.0
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 5.5e-08 60.8 52 55.8
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.5e-08 60.8 48 60.4
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 9.4e-08 60.1 42 66.7
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 9.4e-08 60.1 42 69.0
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 9.4e-08 60.1 42 69.0
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 9.4e-08 60.1 52 59.6
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 1.2e-07 59.7 51 56.9
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.2e-07 59.7 51 52.9
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.2e-07 59.7 52 55.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.2e-07 59.7 52 53.8
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 1.2e-07 59.7 52 53.8
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.6e-07 59.3 42 69.0
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.6e-07 59.3 42 69.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.6e-07 59.3 52 53.8
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.6e-07 59.3 44 63.6
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.6e-07 59.3 47 59.6
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 2.1e-07 58.9 43 62.8
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 2.1e-07 58.9 43 62.8
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.1e-07 58.9 42 66.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.1e-07 58.9 42 66.7
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.1e-07 58.9 42 66.7
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.1e-07 58.9 42 66.7
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.1e-07 58.9 42 66.7
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 2.1e-07 58.9 62 56.5
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 2.1e-07 58.9 42 66.7
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.7e-07 58.5 59 50.8
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 2.7e-07 58.5 43 62.8
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 2.7e-07 58.5 48 60.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.7e-07 58.5 52 53.8
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 2.7e-07 58.5 40 70.0
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.7e-07 58.5 59 50.8
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 2.7e-07 58.5 42 71.4
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 2.7e-07 58.5 43 65.1
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 2.7e-07 58.5 52 51.9
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.6e-07 58.2 43 67.4
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.6e-07 58.2 43 67.4
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.6e-07 58.2 52 55.8
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 3.6e-07 58.2 47 55.3
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.6e-07 58.2 50 56.0
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 4.7e-07 57.8 56 51.8
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 4.7e-07 57.8 52 53.8
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.7e-07 57.8 42 66.7
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 8.0e-07 57.0 43 62.8
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 8.0e-07 57.0 59 49.2
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.0e-07 57.0 59 49.2
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 8.0e-07 57.0 59 49.2
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 8.0e-07 57.0 52 51.9
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 8.0e-07 57.0 43 62.8
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 8.0e-07 57.0 50 56.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 8.0e-07 57.0 51 51.0
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 8.0e-07 57.0 51 51.0
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 8.0e-07 57.0 51 51.0
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.0e-06 56.6 48 60.4
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.4e-06 56.2 51 52.9
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.8e-06 55.8 40 67.5
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.3e-06 55.5 43 62.8
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 4.0e-06 54.7 42 64.3
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 4.0e-06 54.7 42 64.3
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 4.0e-06 54.7 52 48.1
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 5.2e-06 54.3 52 51.9
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 5.2e-06 54.3 54 50.0
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 6.8e-06 53.9 58 51.7
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 8.8e-06 53.5 43 60.5


User provided reference genes

Program Settings