Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 2.5e-113 412.1 210 100.0
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 8.7e-34 147.9 188 42.0
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 4.3e-33 145.6 201 40.8
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 6.2e-32 141.7 196 43.4
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 2.4e-31 139.8 192 42.7
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 3.1e-31 139.4 188 41.5
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 4.1e-31 139.0 194 41.2
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 4.1e-31 139.0 202 41.1
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 2.0e-30 136.7 195 39.0
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 3.4e-30 136.0 191 37.7
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.0e-29 134.4 202 39.6
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 2.2e-29 133.3 206 38.3
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 2.2e-29 133.3 194 40.2
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 8.4e-29 131.3 203 38.4
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.1e-28 131.0 192 40.1
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 1.4e-28 130.6 198 38.4
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 3.2e-28 129.4 189 39.2
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.2e-28 129.0 187 38.5
Haze_05595 Corylus avellana HOM05D007839 ORTHO05D009924 9.3e-28 127.9 193 38.9
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 1.6e-27 127.1 204 37.7
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 2.1e-27 126.7 212 37.7
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 2.7e-27 126.3 195 37.4
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 2.7e-27 126.3 192 38.5
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 3.5e-27 125.9 198 34.8
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 4.6e-27 125.6 192 36.5
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 6.1e-27 125.2 195 36.9
Sabra11G0067200 Salix brachista HOM05D007839 ORTHO05D009924 6.1e-27 125.2 202 34.7
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 6.1e-27 125.2 209 36.8
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 1.0e-26 124.4 195 36.9
AT2G34530 Arabidopsis thaliana HOM05D007839 ORTHO05D009924 1.3e-26 124.0 194 38.7
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 1.3e-26 124.0 204 37.3
BolC4t23033H Brassica oleracea HOM05D007839 ORTHO05D009924 1.3e-26 124.0 203 37.9
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 1.3e-26 124.0 194 39.2
BraA05t20061Z Brassica rapa HOM05D007839 ORTHO05D009924 1.8e-26 123.6 203 37.9
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 1.8e-26 123.6 205 36.1
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 2.3e-26 123.2 197 37.6
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 3.9e-26 122.5 191 36.1
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 5.1e-26 122.1 191 39.8
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 8.7e-26 121.3 207 36.2
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 1.1e-25 120.9 199 36.7
CsaV3_6G051740 Cucumis sativus L. HOM05D007839 ORTHO05D009924 1.5e-25 120.6 202 35.1
AL4G30500 Arabidopsis lyrata HOM05D007839 ORTHO05D009924 2.5e-25 119.8 191 37.2
Sp4g16790 Schrenkiella parvula HOM05D007839 ORTHO05D009924 4.3e-25 119.0 204 36.3
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 4.3e-25 119.0 206 34.0
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 7.4e-25 118.2 202 35.6
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 1.3e-24 117.5 191 37.7
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 4.8e-24 115.5 189 37.0
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 4.8e-24 115.5 207 36.2
BcaB06g28780 Brassica carinata HOM05D007839 ORTHO05D009924 1.8e-23 113.6 188 37.8
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 1.8e-23 113.6 128 42.2
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 4.1e-23 112.5 131 42.7
C04p63860 Brassica napus HOM05D007839 ORTHO05D009924 9.0e-23 111.3 196 36.7
BraA04t18149Z Brassica rapa HOM05D007839 ORTHO05D009924 9.0e-23 111.3 196 36.7
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 1.5e-22 110.5 197 36.0
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 2.0e-22 110.2 198 36.4
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 4.5e-22 109.0 198 34.3
GSVIVG01021458001 Vitis vinifera HOM05D007839 ORTHO05D009924 3.8e-21 105.9 128 43.0
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 5.0e-21 105.5 198 36.9
RcHm_v2.0_Chr5g0014111 Rosa chinensis HOM05D007839 ORTHO05D009924 2.5e-20 103.2 134 43.3
C04p14500 Brassica napus HOM05D007839 ORTHO05D009924 5.5e-20 102.1 141 42.6
A05p11150 Brassica napus HOM05D007839 ORTHO05D009924 7.2e-20 101.7 141 42.6
PGSC0003DMG400021096 Solanum tuberosum HOM05D007839 ORTHO05D009924 4.6e-19 99.0 131 45.0
BolC4t27853H Brassica oleracea HOM05D007839 ORTHO05D009924 6.1e-19 98.6 130 43.1
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 7.9e-19 98.2 196 33.2
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 3.9e-18 95.9 99 44.4
A04p26450 Brassica napus HOM05D007839 ORTHO05D009924 2.0e-17 93.6 134 41.0
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 7.4e-17 91.7 145 37.9
Gorai.010G238500 Gossypium raimondii HOM05D007839 ORTHO05D009924 3.7e-16 89.4 204 32.4
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 1.4e-15 87.4 188 32.4
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 2.4e-15 86.7 189 33.9
Thhalv10017730m.g Eutrema salsugineum HOM05D007839 ORTHO05D009924 4.5e-14 82.4 120 40.0
Gohir.D06G204450 Gossypium hirsutum HOM05D007839 ORTHO05D009924 7.7e-14 81.6 150 35.3
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 2.9e-13 79.7 144 33.3
CANSAT35G0336 Cannabis sativa HOM05D007839 ORTHO05D009924 6.5e-13 78.6 197 33.0
ATR1091G017 Amborella trichopoda HOM05D007839 ORTHO05D009924 1.6e-11 73.9 210 28.1
TPR.G11372 Trifolium pratense HOM05D007839 ORTHO05D009924 1.0e-10 71.2 133 35.3
Carub.0004s1620 Capsella rubella HOM05D007839 ORTHO05D009924 1.1e-09 67.8 202 27.7
Haze_05600 Corylus avellana HOM05D007839 ORTHO05D009924 1.3e-08 64.3 142 33.8
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 2.8e-08 63.2 85 44.7
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 9.1e-07 58.2 183 27.9
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 1.5e-06 57.4 71 40.8
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 1.5e-06 57.4 71 40.8
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 1.5e-06 57.4 71 40.8
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 2.0e-06 57.0 71 40.8
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 2.0e-06 57.0 71 40.8
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 2.0e-06 57.0 71 40.8


User provided reference genes

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