Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 4.1e-185 651.4 357 100.0
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 7.1e-137 491.1 350 73.7
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.6e-136 490.0 357 72.3
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 3.5e-136 488.8 357 72.3
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 8.2e-133 477.6 360 71.7
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.1e-132 477.2 357 68.6
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.2e-129 465.7 359 69.9
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 5.5e-129 464.9 357 69.2
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 7.2e-129 464.5 357 73.4
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 3.6e-128 462.2 359 68.8
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.0e-127 460.7 357 68.3
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 3.9e-127 458.8 362 70.2
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 8.7e-127 457.6 351 69.5
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.5e-126 456.1 358 69.0
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.5e-126 456.1 358 69.0
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 2.8e-125 452.6 362 68.2
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 6.3e-125 451.4 357 67.5
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 1.4e-124 450.3 358 69.3
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.8e-124 449.9 359 67.1
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 9.1e-124 447.6 358 65.9
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 5.9e-123 444.9 352 68.8
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 8.5e-122 441.0 362 65.7
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.1e-121 440.7 449 56.8
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 1.4e-121 440.3 354 64.4
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 2.5e-121 439.5 362 66.6
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 5.5e-121 438.3 360 65.8
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.8e-119 433.3 363 65.0
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 3.0e-119 432.6 349 65.0
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 7.4e-118 427.9 357 62.5
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 7.4e-118 427.9 357 62.5
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.7e-117 426.8 352 65.3
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 4.8e-117 425.2 357 63.9
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.5e-115 420.2 350 63.4
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 2.0e-115 419.9 357 63.9
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 3.4e-115 419.1 357 62.2
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 1.7e-114 416.8 358 62.6
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.7e-114 416.8 359 63.8
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 2.2e-114 416.4 301 74.1
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 5.0e-114 415.2 357 61.1
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 5.0e-114 415.2 343 66.2
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.4e-113 413.7 350 63.4
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 4.2e-113 412.1 349 61.9
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 7.2e-113 411.4 349 61.9
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 6.1e-112 408.3 357 63.0
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.8e-111 406.8 357 62.5
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 2.3e-111 406.4 351 60.7
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 8.8e-111 404.4 352 63.1
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 2.0e-110 403.3 357 61.1
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 3.3e-110 402.5 350 63.7
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.7e-110 401.0 402 59.0
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.6e-107 393.7 351 59.5
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 5.0e-106 388.7 352 59.7
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 5.5e-105 385.2 408 55.9
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 7.2e-105 384.8 285 71.6
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.6e-104 382.5 392 55.4
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 6.1e-104 381.7 345 62.6
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 3.0e-103 379.4 360 56.9
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 8.8e-103 377.9 314 62.4
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.6e-102 376.3 330 60.9
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 3.3e-102 375.9 339 62.2
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 5.7e-102 375.2 356 57.9
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 1.4e-100 370.5 353 59.5
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.4e-100 369.8 351 56.4
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.7e-99 366.3 352 60.2
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 2.7e-99 366.3 356 56.2
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 1.3e-98 364.0 340 56.5
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 8.5e-98 361.3 349 59.6
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.5e-97 360.5 328 57.3
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.1e-96 356.7 353 58.6
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 3.6e-96 355.9 342 53.8
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 6.1e-96 355.1 346 59.8
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 8.0e-96 354.8 307 63.8
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.0e-95 354.4 357 57.4
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.3e-95 353.2 358 56.4
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 3.0e-95 352.8 292 66.4
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 4.0e-95 352.4 347 55.3
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 6.8e-95 351.7 298 63.8
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.5e-94 350.5 359 54.0
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.4e-94 349.4 349 54.7
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 7.5e-94 348.2 352 58.2
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 1.3e-93 347.4 362 54.1
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 2.8e-93 346.3 354 51.4
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 3.1e-92 342.8 351 57.0
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 3.1e-92 342.8 337 58.2
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.6e-91 340.5 358 53.9
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-91 340.1 421 51.3
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.0e-91 340.1 421 51.3
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 2.7e-91 339.7 349 55.9
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 4.5e-91 339.0 347 57.3
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 1.3e-90 337.4 353 53.0
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 1.7e-90 337.0 359 52.6
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 2.2e-90 336.7 352 51.7
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 5.0e-90 335.5 359 52.4
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 8.5e-90 334.7 359 53.2
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.1e-89 334.3 358 52.2
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.5e-89 334.0 351 53.6
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 2.5e-89 333.2 248 68.5
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.2e-88 330.9 426 49.3
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 2.1e-88 330.1 351 51.0
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 3.0e-87 326.2 353 51.8
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 3.0e-87 326.2 353 51.8
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.0e-86 323.6 244 69.3
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.6e-86 323.2 353 51.6
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 5.7e-86 322.0 344 54.1
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 6.3e-85 318.5 355 51.5
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 6.3e-85 318.5 353 54.4
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 8.3e-85 318.2 291 62.9
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.0e-83 313.5 347 51.3
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 2.7e-83 313.2 296 60.1
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 2.7e-83 313.2 290 55.9
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 3.5e-83 312.8 266 63.9
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 2.9e-82 309.7 355 51.3
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 2.5e-81 306.6 335 53.1
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 4.3e-81 305.8 368 48.6
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.0e-79 301.2 389 47.0
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 2.9e-77 293.1 351 46.2
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.9e-77 293.1 364 47.8
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 8.3e-77 291.6 356 51.4
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 1.6e-75 287.3 259 63.3
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 2.5e-73 280.0 397 44.3
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 9.5e-73 278.1 259 64.5
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 4.4e-70 269.2 268 59.3
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 1.3e-69 267.7 349 48.4
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.2e-69 266.9 360 48.6
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 6.4e-69 265.4 300 47.7
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.1e-68 264.6 280 52.1
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 1.2e-67 261.2 309 49.8
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 7.8e-67 258.5 317 52.1
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.0e-66 258.1 343 48.4
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 8.6e-66 255.0 306 50.7
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.9e-65 253.8 271 54.6
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.9e-65 253.8 356 46.3
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.5e-65 253.4 305 47.9
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 1.4e-63 247.7 184 73.9
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.6e-62 243.4 201 63.2
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.3e-61 241.1 267 53.6
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.7e-61 239.6 335 44.2
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 4.9e-61 239.2 187 65.2
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 6.0e-59 232.3 427 40.3
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 3.4e-54 216.5 160 71.2
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 3.8e-53 213.0 261 51.0
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 2.5e-49 200.3 349 39.0
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.6e-48 197.6 358 40.2
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 3.1e-47 193.4 136 66.2
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.6e-43 181.0 356 38.5
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.1e-40 170.6 141 61.7
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 2.8e-40 170.2 137 67.2
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.8e-40 170.2 171 57.3
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 7.1e-36 155.6 128 66.4
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.0e-34 151.8 110 74.5
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.8e-34 151.0 158 53.8
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 1.5e-33 147.9 110 63.6
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 7.4e-33 145.6 156 51.9
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 2.1e-32 144.1 191 48.7
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 4.0e-31 139.8 109 66.1
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.8e-29 133.3 110 70.9
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.6e-27 127.9 122 56.6
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.0e-26 123.6 254 39.8
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.6e-25 118.6 298 37.2
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 8.2e-24 115.5 76 69.7
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 2.0e-22 110.9 72 81.9
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 1.9e-17 94.4 73 71.2
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 1.9e-17 94.4 96 50.0
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 4.3e-17 93.2 92 66.3
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.6e-14 84.0 57 78.9
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.9e-12 77.8 45 80.0
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 1.6e-11 74.7 85 56.5
Actinidia16726 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.7e-09 66.2 45 77.8
BraA01t01255Z Brassica rapa HOM05D001248 ORTHO05D001183 1.1e-07 62.0 295 25.4
PGSC0003DMG402008294 Solanum tuberosum HOM05D004223 ORTHO05D004792 4.1e-07 60.1 52 63.5
Mapoly0007s0062 Marchantia polymorpha HOM05D001248 ORTHO05D001183 2.6e-06 57.4 307 24.4
FAN02G3483 Fragaria x ananassa HOM05D004223 ORTHO05D025614 4.5e-06 56.6 79 39.2
Cpa.g.sc198.34 Carica papaya HOM05D001248 ORTHO05D001183 5.9e-06 56.2 324 24.1


User provided reference genes

Program Settings