Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.5e-127 459.5 234 100.0
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 7.5e-103 377.5 234 79.1
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 2.7e-100 369.0 234 79.9
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.3e-99 366.7 233 77.7
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.2e-97 360.1 234 78.2
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 8.1e-97 357.5 235 75.7
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 3.1e-96 355.5 234 77.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 8.9e-96 354.0 233 77.3
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 4.4e-95 351.7 235 73.6
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-94 349.4 235 72.8
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.9e-93 346.3 235 74.9
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.9e-93 346.3 235 72.3
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.4e-93 345.9 235 75.3
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.4e-93 345.9 235 74.9
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 4.1e-93 345.1 257 69.3
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 5.4e-93 344.7 234 73.5
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 7.1e-93 344.4 235 72.8
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.2e-92 343.6 234 71.8
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 1.6e-92 343.2 235 73.6
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 4.6e-92 341.7 234 73.1
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 1.0e-91 340.5 220 75.5
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.0e-91 340.5 253 69.6
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.3e-91 340.1 234 71.8
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 3.0e-91 339.0 236 73.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.0e-91 339.0 236 72.9
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 6.6e-91 337.8 235 73.2
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 8.6e-91 337.4 232 72.8
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.1e-90 337.0 235 73.2
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.1e-90 337.0 236 73.3
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 3.3e-90 335.5 235 72.8
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.3e-90 335.1 224 75.4
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 5.6e-90 334.7 222 74.8
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 7.3e-90 334.3 234 71.8
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 7.3e-90 334.3 235 71.1
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 9.6e-90 334.0 224 76.3
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 1.6e-89 333.2 234 71.8
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.6e-89 333.2 235 72.3
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 2.1e-89 332.8 218 74.8
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.6e-89 332.0 235 71.9
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 3.6e-89 332.0 235 71.9
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 6.2e-89 331.3 236 72.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.2e-89 331.3 221 75.6
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 6.2e-89 331.3 234 70.9
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 8.1e-89 330.9 235 71.1
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 8.1e-89 330.9 221 75.1
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.1e-89 330.9 221 75.6
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.1e-88 328.9 224 74.6
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.0e-88 328.6 235 70.2
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 6.9e-88 327.8 223 74.0
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 6.9e-88 327.8 235 69.8
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-87 327.0 217 75.1
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.5e-87 326.6 236 71.6
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 1.5e-87 326.6 234 69.7
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.5e-87 326.6 232 72.4
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 2.0e-87 326.2 229 73.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.0e-87 326.2 232 72.8
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 2.0e-87 326.2 234 70.9
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.6e-87 325.9 219 75.3
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 3.4e-87 325.5 234 69.2
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 3.4e-87 325.5 223 72.2
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 3.4e-87 325.5 234 69.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 4.4e-87 325.1 232 69.8
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 7.6e-87 324.3 234 70.1
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.3e-86 323.6 227 73.6
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 1.7e-86 323.2 236 71.2
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.7e-86 323.2 235 69.4
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 2.2e-86 322.8 235 70.2
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 2.2e-86 322.8 292 60.3
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 2.2e-86 322.8 223 74.0
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 2.9e-86 322.4 223 72.2
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 2.9e-86 322.4 219 73.1
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 6.4e-86 321.2 234 68.8
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 6.4e-86 321.2 233 68.2
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 8.4e-86 320.9 225 72.4
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.1e-85 320.5 234 69.7
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.4e-85 320.1 234 68.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.2e-85 318.9 236 69.5
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 4.2e-85 318.5 235 69.4
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 4.2e-85 318.5 220 71.8
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 5.4e-85 318.2 229 70.7
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 9.3e-85 317.4 208 76.4
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 3.5e-84 315.5 235 68.9
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 3.5e-84 315.5 235 68.9
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 3.5e-84 315.5 235 69.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.5e-84 315.5 234 67.5
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 3.5e-84 315.5 241 66.0
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 4.6e-84 315.1 217 71.0
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 7.8e-84 314.3 219 72.1
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 7.8e-84 314.3 216 72.2
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 7.8e-84 314.3 216 71.3
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.7e-83 313.2 215 72.6
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 3.9e-83 312.0 225 70.2
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 6.6e-83 311.2 219 70.3
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 8.7e-83 310.8 235 66.0
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 8.7e-83 310.8 216 71.3
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 8.7e-83 310.8 228 68.4
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 2.5e-82 309.3 226 70.4
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.3e-82 308.9 204 76.0
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.3e-82 308.9 204 76.0
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.3e-82 307.8 234 67.1
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 1.3e-81 307.0 236 68.2
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 8.1e-81 304.3 264 62.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 1.8e-80 303.1 214 69.6
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 5.8e-79 298.1 217 66.8
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 5.8e-79 298.1 210 70.5
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.3e-78 297.0 209 70.8
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.7e-78 296.6 235 66.0
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 2.2e-78 296.2 234 65.4
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.2e-78 296.2 215 67.9
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.9e-78 295.8 234 65.4
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.9e-78 295.0 210 68.1
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 8.4e-78 294.3 225 68.9
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 5.4e-77 291.6 256 59.8
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 7.1e-77 291.2 214 65.0
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 2.7e-76 289.3 169 86.4
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 6.0e-76 288.1 216 68.5
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 3.9e-75 285.4 234 65.4
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.9e-75 285.4 233 61.8
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.1e-74 283.9 214 64.0
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 9.6e-74 280.8 317 51.1
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.8e-71 271.6 163 82.2
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 1.7e-70 270.0 201 63.7
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 3.5e-68 262.3 170 77.6
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 9.6e-66 254.2 216 63.0
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.3e-65 253.8 234 60.3
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.2e-63 247.3 220 62.3
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.6e-63 246.1 220 59.1
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.7e-60 236.1 224 54.0
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.1e-58 230.7 175 65.1
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 5.7e-58 228.4 219 53.0
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 5.7e-58 228.4 228 52.6
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 5.7e-58 228.4 175 60.0
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.6e-57 226.9 175 65.1
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 4.8e-57 225.3 206 59.2
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.4e-56 223.0 128 83.6
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 1.2e-55 220.7 176 64.2
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-54 216.5 145 75.9
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.9e-53 213.4 167 66.5
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.5e-53 213.0 117 86.3
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 4.2e-53 212.2 128 81.2
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 2.3e-51 206.5 246 43.9
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.1e-48 197.6 187 57.2
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.9e-47 191.8 126 69.0
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.1e-45 187.6 104 84.6
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 2.0e-42 176.8 215 46.0
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 3.3e-42 176.0 236 44.1
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.8e-41 172.2 301 38.5
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 8.5e-38 161.4 189 50.3
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.7e-36 156.4 178 51.7
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 2.2e-33 146.7 186 44.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.9e-29 133.7 81 80.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.5e-29 132.1 121 59.5
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 3.3e-26 122.9 103 60.2
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 2.8e-25 119.8 75 78.7
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.8e-25 119.8 167 44.3
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 3.7e-25 119.4 103 59.2
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 8.2e-25 118.2 91 64.8
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.1e-24 115.9 159 45.3
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.5e-22 108.6 71 71.8
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.2e-21 105.1 110 53.6
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 9.4e-21 104.8 67 76.1
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 2.3e-19 100.1 176 38.1
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.0e-19 99.8 81 60.5
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.5e-18 97.4 59 78.0
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 3.4e-18 96.3 177 35.6
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 7.5e-18 95.1 94 56.4
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.3e-17 94.4 242 32.2
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 3.7e-17 92.8 78 55.1
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 2.4e-16 90.1 137 40.9
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 3.5e-15 86.3 88 52.3
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 6.1e-12 75.5 45 80.0
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 5.7e-10 68.9 40 80.0
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 1.4e-08 64.3 52 63.5
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 4.1e-08 62.8 60 48.3
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 1.7e-06 57.4 40 72.5
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 2.3e-06 57.0 122 36.1
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.9e-06 56.6 34 67.6


User provided reference genes

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