Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.2e-209 733.0 381 100.0
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.2e-129 467.2 377 65.8
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.9e-128 461.8 377 65.8
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.3e-125 453.0 384 63.5
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 2.2e-123 446.4 383 63.7
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.5e-121 440.3 365 63.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 2.2e-120 436.4 383 61.4
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.4e-119 433.7 377 61.3
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.4e-119 433.7 377 64.2
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.2e-119 432.6 382 61.5
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.5e-116 422.9 384 61.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 5.7e-116 421.8 378 59.3
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.2e-115 419.9 382 61.3
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 4.8e-115 418.7 374 59.4
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.3e-115 418.3 382 63.1
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.0e-113 413.3 374 61.8
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.0e-113 413.3 374 61.8
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.5e-113 412.1 337 63.5
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.7e-113 411.4 382 57.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.5e-111 406.4 375 60.3
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.2e-111 406.0 329 64.4
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 3.2e-111 406.0 375 59.7
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.5e-111 405.2 375 59.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 6.1e-110 401.7 374 58.3
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.4e-109 400.6 374 60.2
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 8.8e-109 397.9 382 59.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.3e-108 396.0 370 58.4
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.4e-108 395.6 374 59.9
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.7e-107 392.5 370 57.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.1e-106 391.0 377 58.1
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.4e-106 389.8 382 58.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.1e-106 389.4 371 57.7
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.1e-106 389.4 370 57.6
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 5.3e-106 388.7 376 59.6
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 7.0e-106 388.3 371 58.2
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.0e-105 386.7 374 56.1
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 2.6e-105 386.3 347 60.8
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.0e-104 384.4 374 55.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.2e-104 383.3 374 54.5
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.1e-103 380.9 384 57.3
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 3.2e-103 379.4 373 55.8
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.4e-103 377.9 416 53.6
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.2e-102 377.5 383 56.9
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.1e-102 375.2 374 55.1
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.4e-101 374.0 374 56.1
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.4e-101 374.0 384 54.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.9e-101 372.5 359 57.9
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 6.7e-101 371.7 383 56.4
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-100 370.5 374 54.0
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 2.6e-100 369.8 380 56.6
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.2e-99 366.7 374 53.5
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 4.8e-99 365.5 375 54.1
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.4e-98 364.0 381 53.0
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.4e-98 364.0 364 56.6
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 3.1e-98 362.8 310 61.3
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 5.3e-98 362.1 381 54.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 9.1e-98 361.3 382 53.1
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 4.5e-97 359.0 373 51.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.3e-96 357.5 326 62.0
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.9e-96 356.3 373 54.2
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 3.8e-96 355.9 372 53.0
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 5.0e-96 355.5 382 55.2
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 5.0e-96 355.5 370 55.9
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 6.5e-96 355.1 381 54.1
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 8.5e-96 354.8 381 53.8
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.5e-95 353.2 375 52.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 4.2e-95 352.4 358 53.4
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.2e-94 350.9 384 53.6
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.0e-93 347.8 377 52.8
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.4e-93 347.4 326 59.8
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.3e-93 346.7 382 52.1
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 5.2e-93 345.5 383 52.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 3.4e-92 342.8 372 53.5
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 6.3e-91 338.6 382 51.0
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.1e-90 335.9 376 51.6
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 4.1e-90 335.9 355 53.5
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 7.0e-90 335.1 373 52.3
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.7e-89 333.2 382 50.0
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.3e-88 330.9 384 51.8
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 8.5e-88 328.2 372 50.8
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 8.5e-88 328.2 380 52.1
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 3.2e-87 326.2 371 48.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 5.5e-87 325.5 382 50.5
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.6e-86 323.9 329 55.9
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.0e-85 321.2 369 49.6
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 9.8e-84 314.7 373 46.6
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.7e-83 313.9 387 47.3
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.7e-83 313.9 374 47.6
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 2.2e-83 313.5 330 52.4
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 3.7e-83 312.8 307 55.7
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 6.3e-83 312.0 374 47.6
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 6.3e-83 312.0 400 48.2
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.1e-82 311.2 373 45.0
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.4e-82 310.8 374 46.3
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 4.1e-82 309.3 373 47.5
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 7.0e-82 308.5 374 46.5
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.6e-81 307.4 377 47.2
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.6e-80 302.0 382 44.2
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 6.6e-80 302.0 374 46.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.1e-79 301.2 373 46.6
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.3e-79 299.7 383 44.4
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.6e-78 297.4 349 49.6
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.6e-78 296.2 374 47.9
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.1e-78 295.4 331 52.3
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 6.1e-78 295.4 378 46.3
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 6.1e-78 295.4 378 46.3
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.2e-76 291.2 379 46.2
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.0e-76 290.4 379 46.2
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 3.4e-76 289.7 357 47.3
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 4.4e-76 289.3 374 45.5
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 5.7e-76 288.9 372 45.7
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 9.8e-76 288.1 372 45.7
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 9.8e-76 288.1 372 45.7
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.3e-75 287.7 286 55.6
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-75 287.3 376 45.2
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.7e-75 287.3 376 45.2
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.2e-75 287.0 374 45.7
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 7.8e-73 278.5 374 44.9
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-72 276.6 375 45.1
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.9e-72 276.2 374 44.4
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 5.0e-72 275.8 374 44.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.3e-69 266.9 333 46.5
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 6.4e-67 258.8 360 42.8
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 3.9e-64 249.6 351 42.2
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 5.0e-64 249.2 330 44.8
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.9e-63 247.3 293 48.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.3e-61 240.4 383 38.4
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.4e-60 236.5 282 49.3
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 5.1e-56 222.6 330 40.9
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.6e-54 217.6 200 55.5
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.1e-37 161.8 130 65.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.2e-36 158.3 130 66.9
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 8.7e-32 142.1 379 33.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.0e-29 133.3 252 37.3
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 2.0e-28 131.0 245 35.9
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.6e-28 130.6 157 45.9
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.9e-27 127.1 125 48.8
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.2e-26 123.6 205 39.5
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.2e-26 123.6 93 63.4
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.1e-26 122.5 144 43.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.2e-25 121.7 389 29.3
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.1e-24 116.3 136 44.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.5e-23 114.0 131 45.0
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 4.3e-23 113.2 379 28.2
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 6.2e-22 109.4 374 25.7
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.1e-21 108.6 376 26.1
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.6e-17 93.2 79 60.8
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.6e-17 93.2 79 60.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.1e-16 89.7 136 36.0
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 3.4e-12 77.0 73 56.2
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.3e-11 75.1 116 41.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 3.8e-11 73.6 71 46.5
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 4.2e-10 70.1 385 25.7
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.0e-08 65.5 70 51.4
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.0e-08 65.5 70 50.0
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.3e-08 65.1 70 50.0
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 2.3e-08 64.3 60 55.0
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 3.0e-08 63.9 60 55.0
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 1.5e-07 61.6 75 44.0
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 3.3e-07 60.5 58 53.4
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 8.2e-06 55.8 70 45.7


User provided reference genes

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