Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 1.2e-44 183.0 99 100.0
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.9e-15 85.9 69 76.8
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.5e-15 85.5 70 72.9
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 3.3e-15 85.1 68 75.0
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 5.6e-15 84.3 69 71.0
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 9.5e-15 83.6 62 77.4
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 2.1e-14 82.4 72 69.4
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 2.8e-14 82.0 63 79.4
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.8e-14 82.0 72 70.8
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 3.6e-14 81.6 71 71.8
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 4.7e-14 81.3 70 71.4
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 8.1e-14 80.5 70 75.7
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 1.1e-13 80.1 59 79.7
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.1e-13 80.1 69 73.9
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 1.4e-13 79.7 69 76.8
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.3e-13 79.0 70 70.0
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 3.1e-13 78.6 89 60.7
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 3.1e-13 78.6 59 76.3
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 3.1e-13 78.6 65 69.2
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 3.1e-13 78.6 70 71.4
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 5.2e-13 77.8 69 66.7
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 6.8e-13 77.4 69 69.6
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 6.8e-13 77.4 69 66.7
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 6.8e-13 77.4 70 67.1
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 8.9e-13 77.0 66 72.7
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 8.9e-13 77.0 55 81.8
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 8.9e-13 77.0 64 76.6
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 8.9e-13 77.0 69 68.1
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 1.5e-12 76.3 70 68.6
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 2.0e-12 75.9 65 73.8
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 2.6e-12 75.5 75 61.3
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.4e-12 75.1 48 85.4
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 3.4e-12 75.1 48 85.4
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.4e-12 75.1 62 71.0
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.4e-12 75.1 70 68.6
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 4.4e-12 74.7 59 71.2
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 4.4e-12 74.7 61 67.2
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 4.4e-12 74.7 68 67.6
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 4.4e-12 74.7 65 72.3
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.8e-12 74.3 68 66.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 7.5e-12 73.9 80 61.2
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 7.5e-12 73.9 72 62.5
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 9.9e-12 73.6 48 79.2
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 9.9e-12 73.6 70 64.3
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 1.7e-11 72.8 64 71.9
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 2.9e-11 72.0 48 79.2
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 2.9e-11 72.0 71 64.8
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 2.9e-11 72.0 71 64.8
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 2.9e-11 72.0 71 64.8
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 2.9e-11 72.0 63 68.3
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 2.9e-11 72.0 65 70.8
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 3.7e-11 71.6 63 69.8
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 3.7e-11 71.6 66 71.2
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.9e-11 71.2 60 70.0
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 4.9e-11 71.2 66 65.2
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 6.4e-11 70.9 48 79.2
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 6.4e-11 70.9 57 70.2
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 8.3e-11 70.5 70 61.4
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 8.3e-11 70.5 60 78.3
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 8.3e-11 70.5 48 79.2
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 8.3e-11 70.5 55 72.7
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 8.3e-11 70.5 63 69.8
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.4e-10 69.7 59 69.5
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.4e-10 69.7 59 69.5
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.4e-10 69.7 58 69.0
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.4e-10 69.7 53 73.6
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.9e-10 69.3 47 80.9
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 2.4e-10 68.9 101 52.5
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 3.2e-10 68.6 65 69.2
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 3.2e-10 68.6 88 58.0
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 5.4e-10 67.8 50 76.0
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 5.4e-10 67.8 46 80.4
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 5.4e-10 67.8 57 75.4
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 7.1e-10 67.4 49 77.6
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 7.1e-10 67.4 63 68.3
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 7.1e-10 67.4 69 62.3
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.1e-10 67.4 53 69.8
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 7.1e-10 67.4 48 75.0
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 9.2e-10 67.0 47 74.5
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 9.2e-10 67.0 49 77.6
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 1.6e-09 66.2 45 75.6
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.6e-09 66.2 60 60.0
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 1.6e-09 66.2 99 56.6
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 2.1e-09 65.9 49 75.5
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 2.1e-09 65.9 59 64.4
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.7e-09 65.5 48 77.1
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 2.7e-09 65.5 48 79.2
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 2.7e-09 65.5 48 79.2
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 2.7e-09 65.5 48 79.2
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 4.6e-09 64.7 48 77.1
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 4.6e-09 64.7 60 71.7
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 6.0e-09 64.3 45 80.0
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 6.0e-09 64.3 65 58.5
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 6.0e-09 64.3 48 75.0
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.0e-08 63.5 48 75.0
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 1.0e-08 63.5 56 71.4
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 1.3e-08 63.2 43 79.1
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 1.7e-08 62.8 61 63.9
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 2.3e-08 62.4 70 60.0
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 3.0e-08 62.0 48 72.9
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 3.0e-08 62.0 65 63.1
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 3.0e-08 62.0 58 69.0
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 5.1e-08 61.2 45 80.0
Hma1.2p1_0187F.1_g082170 Hydrangea macrophylla HOM05D005458 ORTHO05D005672 5.1e-08 61.2 46 82.6
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 6.6e-08 60.8 70 62.9
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 6.6e-08 60.8 80 56.2
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 6.6e-08 60.8 50 76.0
Actinidia39967 Actinidia chinensis HOM05D005458 ORTHO05D005672 1.5e-07 59.7 70 62.9
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 1.5e-07 59.7 45 77.8
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.5e-07 59.7 63 58.7
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.5e-07 59.7 63 58.7
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 1.9e-07 59.3 70 64.3
Psat4g203440 Pisum sativum HOM05D005458 ORTHO05D005672 1.9e-07 59.3 59 59.3
Cre06.g278238 Chlamydomonas reinhardtii HOM05D005458 ORTHO05D005672 2.5e-07 58.9 55 63.6
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.5e-07 58.9 62 61.3
Medtr8g013640 Medicago truncatula HOM05D005458 ORTHO05D005672 2.5e-07 58.9 58 60.3
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 3.3e-07 58.5 57 66.7
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 3.3e-07 58.5 44 70.5
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 3.3e-07 58.5 44 70.5
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 5.6e-07 57.8 41 75.6
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 9.5e-07 57.0 44 75.0
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 9.5e-07 57.0 70 60.0
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 1.6e-06 56.2 44 77.3
TAR633G2004 Trochodendron aralioides HOM05D005458 ORTHO05D005672 2.1e-06 55.8 70 60.0
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 2.8e-06 55.5 70 55.7
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 4.7e-06 54.7 55 63.6
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 8.1e-06 53.9 42 76.2
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 8.1e-06 53.9 42 76.2
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 8.1e-06 53.9 55 58.2


User provided reference genes

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