Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01020954001 Vitis vinifera HOM05D001607 ORTHO05D001893 1.3e-82 309.7 155 100.0
GSVIVG01020947001 Vitis vinifera HOM05D001607 ORTHO05D001893 3.6e-45 185.3 112 86.6
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 1.6e-16 90.1 57 78.9
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 4.6e-16 88.6 97 58.8
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 5.1e-15 85.1 95 51.6
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 5.1e-15 85.1 95 51.6
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 1.5e-14 83.6 114 47.4
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 1.9e-14 83.2 112 47.3
Nitab4.5_0005845g0050 Nicotiana tabacum HOM05D001607 ORTHO05D001893 5.7e-14 81.6 112 45.5
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 7.4e-14 81.3 119 47.1
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 9.7e-14 80.9 130 46.2
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 1.3e-13 80.5 99 51.5
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.6e-13 80.1 119 46.2
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 1.6e-13 80.1 99 50.5
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-13 79.0 99 50.5
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-13 79.0 100 50.0
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-13 79.0 100 50.0
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 6.3e-13 78.2 85 55.3
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 1.4e-12 77.0 75 57.3
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 2.4e-12 76.3 84 52.4
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 2.4e-12 76.3 90 52.2
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 5.3e-12 75.1 85 54.1
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 6.9e-12 74.7 113 41.6
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 6.9e-12 74.7 130 39.2
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 9.0e-12 74.3 77 58.4
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 9.0e-12 74.3 96 47.9
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.5e-11 73.6 57 66.7
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 2.0e-11 73.2 66 63.6
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 2.0e-11 73.2 57 63.2
HanXRQChr10g0304171 Helianthus annuus HOM05D001607 ORTHO05D001893 2.0e-11 73.2 100 47.0
Gohir.D08G110724 Gossypium hirsutum HOM05D001607 ORTHO05D001893 2.6e-11 72.8 122 42.6
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 2.6e-11 72.8 122 42.6
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 3.4e-11 72.4 105 44.8
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 4.5e-11 72.0 59 62.7
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 4.5e-11 72.0 51 68.6
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 5.9e-11 71.6 57 64.9
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 7.7e-11 71.2 102 46.1
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 1.7e-10 70.1 93 48.4
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 1.7e-10 70.1 99 48.5
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 1.7e-10 70.1 122 41.8
Peaxi162Scf00444g00720 Petunia axillaris HOM05D001607 ORTHO05D001893 1.7e-10 70.1 61 59.0
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 1.7e-10 70.1 100 46.0
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 2.2e-10 69.7 132 41.7
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 2.2e-10 69.7 82 51.2
Oeu045396.1 Olea europaea HOM05D001607 ORTHO05D001893 2.9e-10 69.3 46 71.7
Sopen00g013600 Solanum pennellii HOM05D001607 ORTHO05D001893 2.9e-10 69.3 57 61.4
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 3.8e-10 68.9 60 65.0
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 3.8e-10 68.9 91 47.3
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 5.0e-10 68.6 106 45.3
VMungo0720G1584 Vigna mungo HOM05D001607 ORTHO05D001893 5.0e-10 68.6 93 46.2
CAN.G307.25 Capsicum annuum HOM05D001607 ORTHO05D001893 6.5e-10 68.2 57 59.6
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 6.5e-10 68.2 122 41.8
Glyma.09G137300 Glycine max HOM05D001607 ORTHO05D001893 8.5e-10 67.8 63 57.1
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 1.1e-09 67.4 75 53.3
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 1.4e-09 67.0 122 40.2
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 1.4e-09 67.0 64 54.7
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.9e-09 66.6 51 68.6
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 2.5e-09 66.2 46 65.2
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 2.5e-09 66.2 50 66.0
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 3.2e-09 65.9 62 58.1
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 5.5e-09 65.1 43 72.1
MSTRG.27107 Avicennia marina HOM05D001607 ORTHO05D001893 7.2e-09 64.7 65 55.4
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 7.2e-09 64.7 74 52.7
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 7.2e-09 64.7 74 52.7
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 7.2e-09 64.7 68 52.9
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 7.2e-09 64.7 55 60.0
QL09p013733 Quercus lobata HOM05D001607 ORTHO05D001893 7.2e-09 64.7 57 61.4
QL93p1997_0001 Quercus lobata HOM05D001607 ORTHO05D001893 7.2e-09 64.7 57 61.4
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 9.4e-09 64.3 86 46.5
DCAR_001509 Daucus carota HOM05D001607 ORTHO05D001893 9.4e-09 64.3 72 51.4
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 1.2e-08 63.9 104 42.3
BcaNung04146 Brassica carinata HOM05D001607 ORTHO05D001893 1.2e-08 63.9 99 45.5
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 1.2e-08 63.9 68 52.9
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 1.6e-08 63.5 74 51.4
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 1.6e-08 63.5 74 50.0
Phvul.007G071600 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 1.6e-08 63.5 91 45.1
MBI18_g25519_MAGBIO Magnolia biondii HOM05D001607 ORTHO05D001893 2.1e-08 63.2 107 41.1
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 2.7e-08 62.8 61 52.5
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 2.7e-08 62.8 104 42.3
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 3.6e-08 62.4 86 45.3
C07p50960 Brassica napus HOM05D001607 ORTHO05D001893 6.1e-08 61.6 105 44.8
BolC7t45597H Brassica oleracea HOM05D001607 ORTHO05D001893 6.1e-08 61.6 43 69.8
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 6.1e-08 61.6 63 54.0
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 6.1e-08 61.6 63 54.0
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 7.9e-08 61.2 58 55.2
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 1.0e-07 60.8 105 41.9
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 1.0e-07 60.8 57 56.1
EL10Ac3g05618 Beta vulgaris HOM05D001607 ORTHO05D001893 1.0e-07 60.8 65 49.2
Cfa022709 Carpinus fangiana HOM05D001607 ORTHO05D001893 1.0e-07 60.8 47 59.6
Cfa022711 Carpinus fangiana HOM05D001607 ORTHO05D001893 1.0e-07 60.8 47 59.6
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 1.0e-07 60.8 58 56.9
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 1.0e-07 60.8 44 65.9
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 1.4e-07 60.5 44 65.9
Glyma.16G182500 Glycine max HOM05D001607 ORTHO05D001893 2.3e-07 59.7 63 50.8
arahy.Tifrunner.gnm1.ann1.2YSW8E Arachis hypogaea HOM05D001607 ORTHO05D001893 3.0e-07 59.3 57 56.1
arahy.Tifrunner.gnm1.ann1.HZL4S5 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.0e-07 59.3 57 56.1
arahy.Tifrunner.gnm1.ann1.M3PRP5 Arachis hypogaea HOM05D001607 ORTHO05D001893 3.0e-07 59.3 57 56.1
Cpa.g.sc107.66 Carica papaya HOM05D001607 ORTHO05D001893 3.0e-07 59.3 61 52.5
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 3.0e-07 59.3 63 52.4
Lalb_Chr19g0130771 Lupinus albus HOM05D001607 ORTHO05D001893 3.0e-07 59.3 74 47.3
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 3.9e-07 58.9 71 45.1
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 8.8e-07 57.8 41 68.3
AUR62015965 Chenopodium quinoa HOM05D001607 ORTHO05D001893 4.3e-06 55.5 76 46.1
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 4.3e-06 55.5 40 67.5
ClCG01G004440 Citrullus lanatus HOM05D001607 ORTHO05D001893 5.7e-06 55.1 76 44.7
Glyma.09G137200 Glycine max HOM05D001607 ORTHO05D001893 5.7e-06 55.1 62 48.4
MELO3C005470.2 Cucumis melo HOM05D001607 ORTHO05D001893 9.7e-06 54.3 64 46.9
Manes.06G148952 Manihot esculenta HOM05D001607 ORTHO05D001893 9.7e-06 54.3 51 54.9
unitig_46.g18794 Utricularia gibba HOM05D001607 ORTHO05D001893 9.7e-06 54.3 107 37.4


User provided reference genes

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